Variant report

Variant	rs11768713
Chromosome Location	chr7:129199161-129199162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10257409	0.96[ASN][1000 genomes]
rs1125056	0.92[ASN][1000 genomes]
rs11765308	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765389	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13235012	0.84[ASN][1000 genomes]
rs13239330	0.88[ASN][1000 genomes]
rs1665111	0.87[ASN][1000 genomes]
rs2121265	0.87[ASN][1000 genomes]
rs2598178	0.97[ASN][1000 genomes]
rs2896417	0.91[ASN][1000 genomes]
rs34780485	0.84[ASN][1000 genomes]
rs4554407	0.91[ASN][1000 genomes]
rs56052358	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56178414	0.97[ASN][1000 genomes]
rs612972	0.94[ASN][1000 genomes]
rs659495	0.93[ASN][1000 genomes]
rs875832	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831128	chr7:129063040-129240800	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv3478069	chr7:129157163-129204221	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3478070	chr7:129157177-129204220	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129186400-129201600	Weak transcription	Right Atrium	heart
2	chr7:129192800-129201600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:129193000-129200400	Weak transcription	Gastric	stomach
4	chr7:129197000-129200800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:129198000-129199400	Enhancers	K562	blood
6	chr7:129198400-129201400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:129198600-129200600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:129198600-129200800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:129198600-129200800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:129198600-129201000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr7:129198600-129201400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr7:129198600-129201400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:129198600-129201800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:129198600-129216800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr7:129198800-129201000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:129199000-129199600	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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