Variant report

Variant	rs1665111
Chromosome Location	chr7:129205768-129205769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10257409	0.83[ASN][1000 genomes]
rs10260508	0.86[ASN][1000 genomes]
rs11765308	0.87[ASN][1000 genomes]
rs11765389	0.87[ASN][1000 genomes]
rs11768713	0.87[ASN][1000 genomes]
rs11771609	0.84[ASN][1000 genomes]
rs12154955	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13233863	0.81[ASN][1000 genomes]
rs13235012	0.96[ASN][1000 genomes]
rs13239330	0.90[ASN][1000 genomes]
rs2018797	0.87[ASN][1000 genomes]
rs2121265	0.94[ASN][1000 genomes]
rs2598178	0.85[ASN][1000 genomes]
rs34780485	0.96[ASN][1000 genomes]
rs56052358	0.88[ASN][1000 genomes]
rs56178414	0.85[ASN][1000 genomes]
rs612972	0.81[ASN][1000 genomes]
rs659495	0.81[ASN][1000 genomes]
rs6963433	0.83[ASN][1000 genomes]
rs875832	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831128	chr7:129063040-129240800	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129198600-129216800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:129202800-129206000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr7:129204800-129207000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr7:129205400-129207400	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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