The 2.0 version of rSNPBase

Variant report

Variant rs58482670
Chromosome Location chr2:55260562-55260563
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:112 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:55237600-55272600 Weak transcription Fetal Stomach stomach
2 chr2:55241000-55272400 Weak transcription Fetal Kidney kidney
3 chr2:55243000-55262400 Weak transcription Hela-S3 cervix
4 chr2:55245600-55265600 Weak transcription Stomach Mucosa stomach
5 chr2:55250400-55271000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr2:55250400-55274000 Weak transcription Pancreas Pancrea
7 chr2:55252600-55261400 Enhancers Brain Inferior Temporal Lobe brain
8 chr2:55253400-55273000 Weak transcription Rectal Mucosa Donor 31 rectum
9 chr2:55253800-55260600 Weak transcription Right Atrium heart
10 chr2:55253800-55261400 Weak transcription Fetal Muscle Trunk muscle
11 chr2:55254200-55269800 Weak transcription Aorta Aorta
12 chr2:55254200-55270400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
13 chr2:55254400-55262600 Enhancers Brain Hippocampus Middle brain
14 chr2:55254600-55260600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr2:55254800-55265000 Enhancers Brain Substantia Nigra brain
16 chr2:55255000-55260600 Weak transcription ES-WA7 Cell Line embryonic stem cell
17 chr2:55255200-55261200 Weak transcription HUVEC blood vessel
18 chr2:55255400-55272600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
19 chr2:55255400-55272600 Weak transcription Fetal Intestine Small intestine
20 chr2:55256400-55266600 Weak transcription Left Ventricle heart
21 chr2:55256400-55270400 Weak transcription H9 Cell Line embryonic stem cell
22 chr2:55256600-55262200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
23 chr2:55256600-55264000 Weak transcription Cortex derived primary cultured neurospheres brain
24 chr2:55256600-55265200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
25 chr2:55256800-55264200 Weak transcription HSMMtube muscle
26 chr2:55257000-55262400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
27 chr2:55257600-55260600 Enhancers Colon Smooth Muscle Colon
28 chr2:55257600-55260600 Enhancers Duodenum Smooth Muscle Duodenum
29 chr2:55257600-55260800 Enhancers Adipose Nuclei Adipose
30 chr2:55257600-55261600 Enhancers Breast Myoepithelial Primary Cells Breast
31 chr2:55257600-55261600 Enhancers Brain Angular Gyrus brain
32 chr2:55258000-55260800 Enhancers ES-I3 Cell Line embryonic stem cell
33 chr2:55258000-55261600 Enhancers Primary monocytes fromperipheralblood blood
34 chr2:55258000-55262800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
35 chr2:55258000-55263000 Enhancers Monocytes-CD14+_RO01746 blood
36 chr2:55258200-55262800 Enhancers Primary neutrophils fromperipheralblood blood
37 chr2:55258400-55260800 Enhancers Psoas Muscle Psoas
38 chr2:55258400-55260800 Enhancers Sigmoid Colon Sigmoid Colon
39 chr2:55258400-55261400 Enhancers Fetal Muscle Leg muscle
40 chr2:55258800-55260600 Weak transcription Spleen Spleen
41 chr2:55259000-55260600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
42 chr2:55259000-55261000 Weak transcription Osteobl bone
43 chr2:55259000-55264400 Weak transcription HUES48 Cell Line embryonic stem cell
44 chr2:55259000-55264600 Weak transcription HMEC breast
45 chr2:55259000-55264600 Weak transcription NHLF lung
46 chr2:55259000-55265600 Weak transcription HUES6 Cell Line embryonic stem cell
47 chr2:55259000-55267400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
48 chr2:55259000-55272800 Weak transcription Small Intestine intestine
49 chr2:55259200-55260800 Enhancers Lung lung
50 chr2:55259200-55261600 Enhancers Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015