Variant report

Variant	rs73936812
Chromosome Location	chr2:55264525-55264526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:55255745..55260236-chr2:55263069..55266549,5	K562	blood:
2	chr2:55256384..55258349-chr2:55263077..55265384,2	K562	blood:
3	chr2:55258610..55260236-chr2:55264059..55265743,2	K562	blood:
4	chr2:55261058..55265438-chr2:55268460..55270489,4	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11899197	0.83[AFR][1000 genomes]
rs11899295	0.98[AFR][1000 genomes]
rs11903052	1.00[AMR][1000 genomes]
rs15028	0.81[AFR][1000 genomes]
rs17046564	0.96[AFR][1000 genomes]
rs17046576	1.00[AMR][1000 genomes]
rs55697927	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55879444	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56290934	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58482670	0.96[AFR][1000 genomes]
rs6730793	1.00[AMR][1000 genomes]
rs73936512	0.88[AFR][1000 genomes]
rs73936517	0.98[AFR][1000 genomes]
rs73936518	0.88[AFR][1000 genomes]
rs73936520	1.00[AMR][1000 genomes]
rs73936805	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73936813	0.96[AFR][1000 genomes]
rs73936817	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874155	chr2:55205262-55307646	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55237600-55272600	Weak transcription	Fetal Stomach	stomach
2	chr2:55241000-55272400	Weak transcription	Fetal Kidney	kidney
3	chr2:55245600-55265600	Weak transcription	Stomach Mucosa	stomach
4	chr2:55250400-55271000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:55250400-55274000	Weak transcription	Pancreas	Pancrea
6	chr2:55253400-55273000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr2:55254200-55269800	Weak transcription	Aorta	Aorta
8	chr2:55254200-55270400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr2:55254800-55265000	Enhancers	Brain Substantia Nigra	brain
10	chr2:55255400-55272600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr2:55255400-55272600	Weak transcription	Fetal Intestine Small	intestine
12	chr2:55256400-55266600	Weak transcription	Left Ventricle	heart
13	chr2:55256400-55270400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr2:55256600-55265200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr2:55259000-55264600	Weak transcription	HMEC	breast
16	chr2:55259000-55264600	Weak transcription	NHLF	lung
17	chr2:55259000-55265600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr2:55259000-55267400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr2:55259000-55272800	Weak transcription	Small Intestine	intestine
20	chr2:55259200-55272800	Weak transcription	Fetal Heart	heart
21	chr2:55259400-55275200	Weak transcription	Esophagus	oesophagus
22	chr2:55260000-55264600	Weak transcription	Fetal Brain Male	brain
23	chr2:55260000-55265000	Strong transcription	HSMM	muscle
24	chr2:55260000-55265600	Weak transcription	NHEK	skin
25	chr2:55260800-55264600	Weak transcription	Gastric	stomach
26	chr2:55260800-55266000	Weak transcription	Adipose Nuclei	Adipose
27	chr2:55260800-55266200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr2:55260800-55266600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr2:55260800-55270400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr2:55260800-55271200	Weak transcription	Lung	lung
31	chr2:55260800-55271200	Weak transcription	Right Atrium	heart
32	chr2:55260800-55272000	Weak transcription	NH-A	brain
33	chr2:55260800-55272400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr2:55260800-55273200	Weak transcription	Psoas Muscle	Psoas
35	chr2:55261200-55273000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr2:55261400-55272800	Weak transcription	Thymus	Thymus
37	chr2:55261600-55264600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr2:55261600-55265800	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr2:55261600-55266000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr2:55261600-55266000	Weak transcription	Brain Cingulate Gyrus	brain
41	chr2:55261600-55266200	Weak transcription	Brain Angular Gyrus	brain
42	chr2:55261600-55266600	Weak transcription	Fetal Thymus	thymus
43	chr2:55261600-55269400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr2:55261600-55271200	Weak transcription	Ovary	ovary
45	chr2:55262000-55266600	ZNF genes & repeats	A549	lung
46	chr2:55262600-55270200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr2:55262800-55264600	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr2:55262800-55267600	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr2:55263000-55264800	Enhancers	K562	blood
50	chr2:55263000-55264800	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links