Variant report

Variant	rs585288
Chromosome Location	chr11:100768280-100768281
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11224533	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1217265	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs577170	1.00[ASN][1000 genomes]
rs579847	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs594062	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs601496	0.81[AFR][1000 genomes]
rs610055	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs622957	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs623600	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs626596	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs641582	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6590834	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs672030	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs672593	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs675395	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7122917	0.85[EUR][1000 genomes]
rs7939762	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7939782	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7950832	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100758400-100798400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:100758600-100773400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:100758600-100795200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:100758800-100789400	Weak transcription	Fetal Muscle Leg	muscle
5	chr11:100758800-100791200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:100761000-100773400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:100761600-100777400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:100761600-100788800	Weak transcription	Fetal Heart	heart
9	chr11:100761800-100773400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:100762800-100779000	Weak transcription	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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