Variant report

Variant	rs641582
Chromosome Location	chr11:100757655-100757656
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11224533	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1217265	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs579847	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs585288	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs594062	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs610055	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs622957	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs623600	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs626596	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6590834	0.81[EUR][1000 genomes]
rs672030	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs672593	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs675395	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7122917	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7939762	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs7939782	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7950832	0.96[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100746600-100758400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:100749200-100758400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:100749400-100759600	Weak transcription	NH-A	brain
4	chr11:100749600-100761200	Weak transcription	HSMM	muscle
5	chr11:100750600-100760800	Weak transcription	NHDF-Ad	bronchial
6	chr11:100751400-100759200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:100752800-100761200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:100754800-100759400	Weak transcription	Fetal Heart	heart
9	chr11:100755000-100766200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:100755400-100760600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr11:100755800-100760800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:100756000-100760000	Weak transcription	Right Atrium	heart
13	chr11:100757000-100759000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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