Variant report

Variant	rs675395
Chromosome Location	chr11:100761523-100761524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100760451..100762134-chr11:100763401..100765846,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11224533	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1217265	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs579847	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs585288	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs594062	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs610055	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs622957	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs623600	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs626596	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs641582	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6590834	0.81[EUR][1000 genomes]
rs672030	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs672593	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7122917	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7939762	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7939782	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7950832	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100755000-100766200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:100758400-100798400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:100758600-100773400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:100758600-100795200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:100758800-100789400	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:100758800-100791200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr11:100759400-100761600	Enhancers	Fetal Heart	heart
8	chr11:100759400-100761800	Enhancers	Left Ventricle	heart
9	chr11:100760200-100761800	Enhancers	Liver	Liver
10	chr11:100760400-100762600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:100760800-100761600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:100760800-100761800	Weak transcription	Right Ventricle	heart
13	chr11:100760800-100762000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr11:100760800-100762000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr11:100760800-100763800	Enhancers	NHDF-Ad	bronchial
16	chr11:100761000-100761600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:100761000-100762000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:100761000-100773400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:100761200-100761800	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr11:100761200-100762000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr11:100761200-100762200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr11:100761200-100762600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:100761200-100762800	Enhancers	HSMM	muscle
24	chr11:100761200-100762800	Enhancers	NHLF	lung
25	chr11:100761200-100764000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:100761400-100761800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:100761400-100762000	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr11:100761400-100762000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:100761400-100762000	Flanking Active TSS	NH-A	brain
30	chr11:100761400-100762000	Flanking Active TSS	Osteobl	bone

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