Variant report

Variant	rs610055
Chromosome Location	chr11:100790382-100790383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11224533	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1217265	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs579847	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs585288	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs594062	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs622957	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs623600	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs626596	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs641582	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6590834	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs672030	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs672593	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs675395	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7122917	0.88[EUR][1000 genomes]
rs7939762	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7939782	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7950832	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100758400-100798400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:100758600-100795200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:100758800-100791200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:100772000-100831400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr11:100773800-100809800	Weak transcription	Left Ventricle	heart
6	chr11:100774800-100812800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:100776000-100794000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:100777400-100794200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr11:100779800-100794200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:100780400-100792600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:100784000-100808800	Weak transcription	Primary B cells from cord blood	blood
12	chr11:100785400-100838400	Weak transcription	Fetal Intestine Small	intestine
13	chr11:100786200-100794000	Weak transcription	HSMMtube	muscle
14	chr11:100786800-100806800	Weak transcription	Placenta	Placenta
15	chr11:100789000-100790600	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr11:100789400-100790400	Enhancers	A549	lung
17	chr11:100789400-100790600	Enhancers	NH-A	brain
18	chr11:100789600-100790400	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr11:100789600-100790800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:100789600-100790800	Enhancers	Adipose Nuclei	Adipose
21	chr11:100789800-100790400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:100789800-100790400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:100789800-100790600	Enhancers	Liver	Liver
24	chr11:100789800-100790600	Enhancers	Brain Germinal Matrix	brain
25	chr11:100789800-100792000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:100790000-100790400	Enhancers	Ovary	ovary
27	chr11:100790000-100790800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:100790000-100796600	Weak transcription	NHEK	skin
29	chr11:100790000-100803200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr11:100790200-100791800	Enhancers	Hela-S3	cervix
31	chr11:100790200-100792200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:100790200-100792600	Weak transcription	Fetal Muscle Leg	muscle
33	chr11:100790200-100793000	Weak transcription	HSMM	muscle
34	chr11:100790200-100793600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr11:100790200-100793800	Weak transcription	Fetal Stomach	stomach
36	chr11:100790200-100793800	Weak transcription	Osteobl	bone
37	chr11:100790200-100796600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr11:100790200-100798200	Weak transcription	Fetal Heart	heart
39	chr11:100790200-100812600	Weak transcription	Stomach Mucosa	stomach

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