Variant report

Variant	rs58572586
Chromosome Location	chr16:80118499-80118500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:80116624..80119575-chr16:80356454..80358256,2	MCF-7	breast:
2	chr16:79636116..79636725-chr16:80117801..80118678,2	K562	blood:
3	chr16:80112188..80115143-chr16:80115792..80118787,2	K562	blood:
4	chr16:80058579..80060805-chr16:80116598..80118912,2	MCF-7	breast:
5	chr16:80030381..80031931-chr16:80117976..80119153,11	MCF-7	breast:
6	chr16:79791124..79791741-chr16:80118276..80118866,2	MCF-7	breast:
7	chr16:80057651..80058518-chr16:80118488..80119366,5	MCF-7	breast:
8	chr16:80061252..80063823-chr16:80117741..80119543,2	MCF-7	breast:
9	chr16:80118484..80119338-chr16:80499839..80500773,2	MCF-7	breast:
10	chr16:79666209..79667056-chr16:80117924..80118676,2	K562	blood:
11	chr16:80048057..80048870-chr16:80118180..80118757,4	MCF-7	breast:
12	chr16:79780426..79781260-chr16:80118290..80119045,2	MCF-7	breast:

No data

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16952309	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16952357	0.86[AFR][1000 genomes]
rs35355849	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58216375	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60282827	0.84[AFR][1000 genomes]
rs6564731	0.91[AFR][1000 genomes]
rs6564732	0.93[AFR][1000 genomes]
rs7204603	0.83[AFR][1000 genomes]
rs74041324	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74041325	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74041326	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80112800-80118600	Enhancers	Fetal Intestine Small	intestine
2	chr16:80117200-80118600	Enhancers	Fetal Intestine Large	intestine
3	chr16:80117600-80118600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr16:80117800-80119000	Enhancers	Fetal Lung	lung
5	chr16:80118000-80118600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr16:80118000-80118600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr16:80118000-80118600	Enhancers	Liver	Liver
8	chr16:80118000-80118600	Enhancers	Esophagus	oesophagus
9	chr16:80118000-80118600	Enhancers	Fetal Muscle Trunk	muscle
10	chr16:80118000-80118600	Enhancers	Placenta	Placenta
11	chr16:80118000-80118600	Enhancers	Fetal Stomach	stomach
12	chr16:80118000-80118600	Enhancers	Fetal Thymus	thymus
13	chr16:80118000-80118800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr16:80118000-80118800	Enhancers	Placenta Amnion	Placenta Amnion
15	chr16:80118000-80119000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr16:80118200-80118600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr16:80118200-80118600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr16:80118200-80118600	Enhancers	Fetal Muscle Leg	muscle
19	chr16:80118200-80118600	Enhancers	Ovary	ovary
20	chr16:80118200-80118600	Enhancers	NHEK	skin
21	chr16:80118200-80118800	Enhancers	A549	lung
22	chr16:80118400-80118600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr16:80118400-80118600	Flanking Active TSS	Brain Hippocampus Middle	brain
24	chr16:80118400-80118600	Enhancers	Colon Smooth Muscle	Colon
25	chr16:80118400-80118600	Enhancers	Duodenum Mucosa	Duodenum
26	chr16:80118400-80118600	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr16:80118400-80118600	Enhancers	Right Atrium	heart
28	chr16:80118400-80119000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr16:80118400-80119800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr16:80118400-80119800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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