Variant report

Variant	rs60282827
Chromosome Location	chr16:80129737-80129738
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13330313	0.85[EUR][1000 genomes]
rs16952305	0.96[EUR][1000 genomes]
rs16952309	0.96[AFR][1000 genomes]
rs16952357	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28455836	0.82[EUR][1000 genomes]
rs35355849	0.85[AFR][1000 genomes]
rs56005515	0.96[EUR][1000 genomes]
rs58216375	0.87[AFR][1000 genomes]
rs58572586	0.84[AFR][1000 genomes]
rs58705251	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6564731	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6564732	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7201181	0.82[EUR][1000 genomes]
rs7202466	0.85[EUR][1000 genomes]
rs7204603	0.92[EUR][1000 genomes]
rs74041324	0.85[AFR][1000 genomes]
rs74041325	0.94[AFR][1000 genomes]
rs74041326	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80127000-80137200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links