Variant report

No.	Distal block	Cell Line	Cell type
1	chr16:80133246..80135427-chr16:80136846..80139540,2	MCF-7	breast:
2	chr16:80127406..80129565-chr16:80138549..80141311,2	MCF-7	breast:
3	chr16:80138093..80140462-chr16:80142206..80144298,2	MCF-7	breast:
4	chr16:80139089..80140824-chr16:80141061..80144366,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs13330313	0.89[EUR][1000 genomes]
rs16944264	0.96[ASN][1000 genomes]
rs16952268	0.81[ASN][1000 genomes]
rs16952283	0.96[ASN][1000 genomes]
rs16952289	0.96[ASN][1000 genomes]
rs16952305	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16952339	0.96[ASN][1000 genomes]
rs16952348	1.00[ASN][1000 genomes]
rs16952357	0.93[EUR][1000 genomes]
rs16952365	1.00[ASN][1000 genomes]
rs16952392	0.96[ASN][1000 genomes]
rs16952422	0.96[ASN][1000 genomes]
rs16952526	0.92[ASN][1000 genomes]
rs2126998	0.96[ASN][1000 genomes]
rs4479242	0.80[ASN][1000 genomes]
rs4888068	0.81[ASN][1000 genomes]
rs4888069	0.81[ASN][1000 genomes]
rs4888071	1.00[ASN][1000 genomes]
rs4888076	0.88[ASN][1000 genomes]
rs4888077	0.88[ASN][1000 genomes]
rs4889094	0.92[ASN][1000 genomes]
rs4889097	0.96[ASN][1000 genomes]
rs4889101	1.00[ASN][1000 genomes]
rs4889103	0.96[ASN][1000 genomes]
rs4889104	0.96[ASN][1000 genomes]
rs56005515	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57189314	0.96[ASN][1000 genomes]
rs58705251	0.96[EUR][1000 genomes]
rs60282827	0.82[EUR][1000 genomes]
rs6564731	0.89[EUR][1000 genomes]
rs6564732	0.89[EUR][1000 genomes]
rs7201181	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7202466	0.96[EUR][1000 genomes]
rs7204603	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80137200-80140200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr16:80137400-80140200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr16:80137400-80140600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr16:80137400-80143000	Enhancers	HMEC	breast
5	chr16:80137600-80140000	Enhancers	Placenta Amnion	Placenta Amnion
6	chr16:80138000-80156000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr16:80138400-80140000	Enhancers	Fetal Stomach	stomach
8	chr16:80138600-80139600	Enhancers	NH-A	brain
9	chr16:80138600-80139600	Enhancers	Osteobl	bone
10	chr16:80138600-80139800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr16:80138800-80139600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr16:80138800-80139600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr16:80139200-80140000	Enhancers	NHEK	skin
14	chr16:80139200-80141800	Weak transcription	HSMM	muscle

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