Variant report

Variant	rs4889094
Chromosome Location	chr16:80122453-80122454
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16944260	0.83[AMR][1000 genomes]
rs16944264	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16952080	0.83[AMR][1000 genomes]
rs16952105	0.83[AMR][1000 genomes]
rs16952193	0.83[AMR][1000 genomes]
rs16952202	0.83[AMR][1000 genomes]
rs16952283	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16952289	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16952305	0.96[ASN][1000 genomes]
rs16952339	0.96[ASN][1000 genomes]
rs16952348	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16952365	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16952392	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16952422	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16952526	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2126998	0.96[ASN][1000 genomes]
rs28455836	0.92[ASN][1000 genomes]
rs4888068	0.83[AMR][1000 genomes]
rs4888071	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4888076	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4888077	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4889078	0.83[AMR][1000 genomes]
rs4889082	0.83[AMR][1000 genomes]
rs4889085	0.83[AMR][1000 genomes]
rs4889097	0.96[ASN][1000 genomes]
rs4889101	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4889103	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4889104	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs56005515	0.96[ASN][1000 genomes]
rs57189314	0.96[ASN][1000 genomes]
rs7201181	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80119200-80125000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr16:80119800-80126200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links