Variant report

Variant	rs16952365
Chromosome Location	chr16:80143650-80143651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:80138093..80140462-chr16:80142206..80144298,2	MCF-7	breast:
2	chr16:80141826..80144611-chr16:80145163..80147859,2	K562	blood:
3	chr16:80139089..80140824-chr16:80141061..80144366,3	MCF-7	breast:
4	chr16:80142621..80144359-chr16:80146389..80148832,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12051173	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes]
rs12325508	0.88[JPT][hapmap]
rs16944260	1.00[AMR][1000 genomes]
rs16944264	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16952080	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs16952105	1.00[AMR][1000 genomes]
rs16952121	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes]
rs16952193	1.00[AMR][1000 genomes]
rs16952202	1.00[AMR][1000 genomes]
rs16952268	0.81[ASN][1000 genomes]
rs16952283	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16952289	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16952305	0.96[ASN][1000 genomes]
rs16952339	0.96[ASN][1000 genomes]
rs16952348	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16952392	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16952422	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16952526	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2126998	0.96[ASN][1000 genomes]
rs28455836	1.00[ASN][1000 genomes]
rs4479242	0.80[ASN][1000 genomes]
rs4888068	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4888069	0.81[ASN][1000 genomes]
rs4888071	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4888076	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4888077	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4889069	0.91[AMR][1000 genomes]
rs4889078	1.00[AMR][1000 genomes]
rs4889080	0.83[AMR][1000 genomes]
rs4889082	1.00[AMR][1000 genomes]
rs4889085	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes]
rs4889094	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4889097	0.96[ASN][1000 genomes]
rs4889101	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4889103	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4889104	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs56005515	0.96[ASN][1000 genomes]
rs57189314	0.96[ASN][1000 genomes]
rs7201181	1.00[ASN][1000 genomes]
rs73573920	0.91[AMR][1000 genomes]
rs73573922	0.91[AMR][1000 genomes]
rs8063394	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80138000-80156000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr16:80140200-80151200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr16:80142600-80145800	Weak transcription	NHEK	skin
4	chr16:80143000-80148000	Weak transcription	HMEC	breast
5	chr16:80143400-80144200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr16:80143400-80151000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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