Variant report

Variant	rs16952121
Chromosome Location	chr16:80071103-80071104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:80060384..80062821-chr16:80069228..80071837,2	MCF-7	breast:
2	chr16:80063723..80065397-chr16:80069694..80072039,2	MCF-7	breast:
3	chr16:80068483..80072051-chr16:80072534..80075808,4	K562	blood:
4	chr16:80056858..80058802-chr16:80070010..80071819,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260237	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12051173	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12325508	1.00[CHB][hapmap]
rs16944260	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16944264	0.91[AMR][1000 genomes]
rs16952080	1.00[CHB][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16952105	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16952193	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16952202	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16952283	0.91[AMR][1000 genomes]
rs16952289	0.91[AMR][1000 genomes]
rs16952348	0.91[AMR][1000 genomes]
rs16952365	0.91[AMR][1000 genomes]
rs16952392	0.91[AMR][1000 genomes]
rs16952422	0.91[AMR][1000 genomes]
rs16952526	0.91[AMR][1000 genomes]
rs4134367	1.00[ASN][1000 genomes]
rs4888068	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes]
rs4888071	0.91[AMR][1000 genomes]
rs4888076	0.91[AMR][1000 genomes]
rs4888077	0.91[AMR][1000 genomes]
rs4889069	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4889078	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4889080	0.91[ASN][1000 genomes]
rs4889082	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4889085	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4889101	0.91[AMR][1000 genomes]
rs4889103	0.91[AMR][1000 genomes]
rs4889104	0.91[AMR][1000 genomes]
rs59263895	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73573920	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73573922	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs8063394	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80062000-80075000	Weak transcription	NH-A	brain
2	chr16:80064000-80072400	Weak transcription	Esophagus	oesophagus
3	chr16:80064400-80072200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr16:80064600-80072200	Weak transcription	NHEK	skin
5	chr16:80064600-80073600	Weak transcription	HMEC	breast
6	chr16:80070200-80074800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr16:80070800-80074200	Weak transcription	Placenta Amnion	Placenta Amnion

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