Variant report

Variant	rs4888068
Chromosome Location	chr16:80108700-80108701
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80101158..80103765-chr16:80107510..80109692,2	MCF-7	breast:
2	chr16:80099587..80102006-chr16:80106087..80108738,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260706	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12051173	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes]
rs12325508	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs16944260	1.00[AMR][1000 genomes]
rs16944264	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16952080	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs16952105	1.00[AMR][1000 genomes]
rs16952121	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes]
rs16952193	1.00[AMR][1000 genomes]
rs16952202	1.00[AMR][1000 genomes]
rs16952268	1.00[ASN][1000 genomes]
rs16952283	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16952289	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16952305	0.84[ASN][1000 genomes]
rs16952339	0.84[ASN][1000 genomes]
rs16952348	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16952365	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16952392	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16952422	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16952526	1.00[AMR][1000 genomes]
rs2126998	0.84[ASN][1000 genomes]
rs28455836	0.81[ASN][1000 genomes]
rs4888069	1.00[ASN][1000 genomes]
rs4888071	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4888076	1.00[AMR][1000 genomes]
rs4888077	1.00[AMR][1000 genomes]
rs4889069	0.91[AMR][1000 genomes]
rs4889078	1.00[AMR][1000 genomes]
rs4889080	0.83[AMR][1000 genomes]
rs4889082	1.00[AMR][1000 genomes]
rs4889085	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4889094	0.83[AMR][1000 genomes]
rs4889097	0.84[ASN][1000 genomes]
rs4889101	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4889103	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4889104	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56005515	0.84[ASN][1000 genomes]
rs57189314	0.84[ASN][1000 genomes]
rs7201181	0.81[ASN][1000 genomes]
rs73573920	0.91[AMR][1000 genomes]
rs73573922	0.91[AMR][1000 genomes]
rs8063394	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80107600-80108800	Enhancers	Fetal Stomach	stomach

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