Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80101158..80103765-chr16:80107510..80109692,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12051173	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12325508	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs16944264	0.85[ASN][1000 genomes]
rs16952080	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs16952121	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap]
rs16952268	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16952283	0.85[ASN][1000 genomes]
rs16952289	0.85[ASN][1000 genomes]
rs16952305	0.84[ASN][1000 genomes]
rs16952339	0.84[ASN][1000 genomes]
rs16952348	0.81[ASN][1000 genomes]
rs16952365	0.81[ASN][1000 genomes]
rs16952392	0.84[ASN][1000 genomes]
rs16952422	0.84[ASN][1000 genomes]
rs17711511	0.81[EUR][1000 genomes]
rs17711661	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2126998	0.84[ASN][1000 genomes]
rs28455836	0.81[ASN][1000 genomes]
rs4888068	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs4888071	0.81[ASN][1000 genomes]
rs4889085	1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[ASN][1000 genomes]
rs4889097	0.84[ASN][1000 genomes]
rs4889101	0.81[ASN][1000 genomes]
rs4889103	0.84[ASN][1000 genomes]
rs4889104	0.84[ASN][1000 genomes]
rs56005515	0.84[ASN][1000 genomes]
rs57189314	0.84[ASN][1000 genomes]
rs7201181	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80108800-80109200	Enhancers	Pancreas	Pancrea
2	chr16:80108800-80118000	Weak transcription	Fetal Stomach	stomach

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