Variant report

Variant	rs16952305
Chromosome Location	chr16:80126843-80126844
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12051173	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs12325508	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs13330313	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs16944264	0.92[ASN][1000 genomes]
rs16952080	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16952121	1.00[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap]
rs16952268	0.84[ASN][1000 genomes]
rs16952283	0.92[ASN][1000 genomes]
rs16952289	0.92[ASN][1000 genomes]
rs16952339	1.00[ASN][1000 genomes]
rs16952348	0.96[ASN][1000 genomes]
rs16952365	0.96[ASN][1000 genomes]
rs16952392	1.00[ASN][1000 genomes]
rs16952422	1.00[ASN][1000 genomes]
rs16952526	0.88[ASN][1000 genomes]
rs2126998	1.00[ASN][1000 genomes]
rs28455836	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4479242	0.83[ASN][1000 genomes]
rs4888068	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4888069	0.84[ASN][1000 genomes]
rs4888071	0.96[ASN][1000 genomes]
rs4888076	0.92[ASN][1000 genomes]
rs4888077	0.92[ASN][1000 genomes]
rs4889085	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs4889094	0.96[ASN][1000 genomes]
rs4889097	1.00[ASN][1000 genomes]
rs4889101	0.96[ASN][1000 genomes]
rs4889103	1.00[ASN][1000 genomes]
rs4889104	1.00[ASN][1000 genomes]
rs56005515	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57189314	1.00[ASN][1000 genomes]
rs58705251	0.81[EUR][1000 genomes]
rs60282827	0.96[EUR][1000 genomes]
rs6564731	0.89[EUR][1000 genomes]
rs6564732	0.89[EUR][1000 genomes]
rs7201181	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7202466	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7204603	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80125600-80127000	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr16:80125600-80127000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr16:80125600-80127000	Enhancers	HMEC	breast
4	chr16:80126200-80127000	Enhancers	Brain Germinal Matrix	brain

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