Variant report

Variant	rs6564732
Chromosome Location	chr16:80138014-80138015
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13330313	0.85[EUR][1000 genomes]
rs16952305	0.89[EUR][1000 genomes]
rs16952309	0.83[AFR][1000 genomes]
rs16952357	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28455836	0.89[EUR][1000 genomes]
rs35355849	0.94[AFR][1000 genomes]
rs56005515	0.89[EUR][1000 genomes]
rs58216375	0.98[AFR][1000 genomes]
rs58572586	0.93[AFR][1000 genomes]
rs58705251	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60282827	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6564731	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7201181	0.89[EUR][1000 genomes]
rs7202466	0.92[EUR][1000 genomes]
rs7204603	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74041324	0.94[AFR][1000 genomes]
rs74041325	0.85[AFR][1000 genomes]
rs74041326	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80134800-80138600	Weak transcription	Osteobl	bone
2	chr16:80135000-80138600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr16:80137200-80138600	Enhancers	NHEK	skin
4	chr16:80137200-80140200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr16:80137400-80138600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr16:80137400-80139200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr16:80137400-80140200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr16:80137400-80140600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr16:80137400-80143000	Enhancers	HMEC	breast
10	chr16:80137600-80138200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr16:80137600-80140000	Enhancers	Placenta Amnion	Placenta Amnion
12	chr16:80137800-80138800	Enhancers	Brain Germinal Matrix	brain
13	chr16:80138000-80139000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr16:80138000-80139000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr16:80138000-80139000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr16:80138000-80156000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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