Variant report

Variant	rs6564731
Chromosome Location	chr16:80132653-80132654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13330313	0.85[EUR][1000 genomes]
rs16952305	0.89[EUR][1000 genomes]
rs16952309	0.81[AFR][1000 genomes]
rs16952357	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28455836	0.89[EUR][1000 genomes]
rs35355849	0.92[AFR][1000 genomes]
rs56005515	0.89[EUR][1000 genomes]
rs58216375	0.95[AFR][1000 genomes]
rs58572586	0.91[AFR][1000 genomes]
rs58705251	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60282827	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6564732	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7201181	0.89[EUR][1000 genomes]
rs7202466	0.92[EUR][1000 genomes]
rs7204603	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74041324	0.92[AFR][1000 genomes]
rs74041325	0.83[AFR][1000 genomes]
rs74041326	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80127000-80137200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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