Variant report

Variant	rs4889085
Chromosome Location	chr16:80098718-80098719
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80061244..80063092-chr16:80096922..80099593,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12051173	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes]
rs16944260	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16944264	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16952080	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes]
rs16952105	1.00[AMR][1000 genomes]
rs16952121	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16952193	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16952202	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16952268	0.96[ASN][1000 genomes]
rs16952283	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16952289	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16952348	1.00[AMR][1000 genomes]
rs16952365	1.00[AMR][1000 genomes]
rs16952392	1.00[AMR][1000 genomes]
rs16952422	1.00[AMR][1000 genomes]
rs16952526	1.00[AMR][1000 genomes]
rs4134367	0.83[ASN][1000 genomes]
rs4888068	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4888069	0.96[ASN][1000 genomes]
rs4888071	1.00[AMR][1000 genomes]
rs4888076	1.00[AMR][1000 genomes]
rs4888077	1.00[AMR][1000 genomes]
rs4889069	0.91[AMR][1000 genomes]
rs4889078	1.00[AMR][1000 genomes]
rs4889080	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4889082	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4889094	0.83[AMR][1000 genomes]
rs4889101	1.00[AMR][1000 genomes]
rs4889103	1.00[AMR][1000 genomes]
rs4889104	1.00[AMR][1000 genomes]
rs73573920	0.91[AMR][1000 genomes]
rs73573922	0.91[AMR][1000 genomes]
rs8063394	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80095800-80099200	Enhancers	Fetal Stomach	stomach
2	chr16:80096800-80098800	Enhancers	Fetal Intestine Small	intestine
3	chr16:80097800-80099600	Enhancers	Fetal Lung	lung
4	chr16:80098400-80099400	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links