Variant report

Variant	rs4889082
Chromosome Location	chr16:80090004-80090005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12051173	1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16944260	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16944264	1.00[AMR][1000 genomes]
rs16952080	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16952105	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16952121	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16952193	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16952202	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16952283	1.00[AMR][1000 genomes]
rs16952289	1.00[AMR][1000 genomes]
rs16952348	1.00[AMR][1000 genomes]
rs16952365	1.00[AMR][1000 genomes]
rs16952392	1.00[AMR][1000 genomes]
rs16952422	1.00[AMR][1000 genomes]
rs16952526	1.00[AMR][1000 genomes]
rs4134367	1.00[ASN][1000 genomes]
rs4888068	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes]
rs4888071	1.00[AMR][1000 genomes]
rs4888076	1.00[AMR][1000 genomes]
rs4888077	1.00[AMR][1000 genomes]
rs4889069	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4889078	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4889080	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4889085	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4889094	0.83[AMR][1000 genomes]
rs4889101	1.00[AMR][1000 genomes]
rs4889103	1.00[AMR][1000 genomes]
rs4889104	1.00[AMR][1000 genomes]
rs59263895	0.88[ASN][1000 genomes]
rs73573920	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73573922	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs8063394	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80081000-80092200	Weak transcription	Right Atrium	heart
2	chr16:80088400-80095000	Enhancers	Fetal Lung	lung
3	chr16:80088400-80095400	Enhancers	Fetal Stomach	stomach
4	chr16:80089000-80091000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr16:80089200-80090600	Weak transcription	Fetal Brain Male	brain
6	chr16:80089200-80091000	Enhancers	Placenta	Placenta
7	chr16:80089200-80092600	Enhancers	Adipose Nuclei	Adipose
8	chr16:80089200-80094800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr16:80089400-80090800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr16:80089400-80091200	Enhancers	Ovary	ovary
11	chr16:80090000-80090200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr16:80090000-80090800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr16:80090000-80090800	Enhancers	Fetal Muscle Trunk	muscle

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