Variant report

Variant	rs59263895
Chromosome Location	chr16:80059268-80059269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:80059154..80062850-chr16:80065920..80069891,5	MCF-7	breast:
2	chr16:80058380..80061170-chr16:80073042..80075693,3	MCF-7	breast:
3	chr16:80045568..80049024-chr16:80056361..80060062,5	MCF-7	breast:
4	chr16:80052898..80058811-chr16:80059069..80065197,11	MCF-7	breast:
5	chr16:80032529..80034163-chr16:80057052..80059822,2	MCF-7	breast:
6	chr16:79640662..79643059-chr16:80057931..80060430,2	MCF-7	breast:
7	chr16:80058579..80060805-chr16:80116598..80118912,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260237	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12051173	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16944260	0.88[ASN][1000 genomes]
rs16952080	1.00[ASN][1000 genomes]
rs16952105	0.92[ASN][1000 genomes]
rs16952121	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16952193	0.88[ASN][1000 genomes]
rs16952202	0.88[ASN][1000 genomes]
rs4134367	0.88[ASN][1000 genomes]
rs4889069	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4889080	0.81[ASN][1000 genomes]
rs4889082	0.88[ASN][1000 genomes]
rs73573920	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73573922	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8063394	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80057200-80059600	Enhancers	Fetal Stomach	stomach
2	chr16:80057400-80059600	Enhancers	Stomach Smooth Muscle	stomach
3	chr16:80057800-80059400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr16:80058000-80059400	Weak transcription	Colon Smooth Muscle	Colon
5	chr16:80058000-80060600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr16:80058000-80060600	Weak transcription	HSMM	muscle
7	chr16:80058000-80061000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr16:80058000-80061000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr16:80058000-80061000	Weak transcription	Placenta	Placenta
10	chr16:80058000-80061000	Weak transcription	Small Intestine	intestine
11	chr16:80058000-80061200	Weak transcription	Right Atrium	heart
12	chr16:80058000-80062200	Weak transcription	Esophagus	oesophagus
13	chr16:80058200-80060400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr16:80058200-80060400	Weak transcription	HMEC	breast
15	chr16:80058200-80060600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr16:80058200-80060800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr16:80058200-80060800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr16:80058200-80060800	Weak transcription	K562	blood
19	chr16:80058200-80060800	Weak transcription	NH-A	brain
20	chr16:80058400-80060800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr16:80058400-80060800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr16:80058400-80061000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr16:80058400-80061000	Weak transcription	Osteobl	bone
24	chr16:80058600-80060600	Weak transcription	HUVEC	blood vessel
25	chr16:80058800-80060800	Enhancers	A549	lung
26	chr16:80059000-80059400	Weak transcription	HSMMtube	muscle
27	chr16:80059000-80060800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr16:80059200-80059600	Flanking Active TSS	Duodenum Mucosa	Duodenum
29	chr16:80059200-80059800	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links