Variant report
| Variant | rs16944260 |
|---|---|
| Chromosome Location | chr16:80088167-80088168 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:80083316..80085801-chr16:80086911..80089877,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs12051173 | 0.91[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs16944264 | 1.00[AMR][1000 genomes] |
| rs16952080 | 1.00[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs16952105 | 1.00[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs16952121 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16952193 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16952202 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16952283 | 1.00[AMR][1000 genomes] |
| rs16952289 | 1.00[AMR][1000 genomes] |
| rs16952348 | 1.00[AMR][1000 genomes] |
| rs16952365 | 1.00[AMR][1000 genomes] |
| rs16952392 | 1.00[AMR][1000 genomes] |
| rs16952422 | 1.00[AMR][1000 genomes] |
| rs16952526 | 1.00[AMR][1000 genomes] |
| rs4134367 | 1.00[ASN][1000 genomes] |
| rs4888068 | 1.00[AMR][1000 genomes] |
| rs4888071 | 1.00[AMR][1000 genomes] |
| rs4888076 | 1.00[AMR][1000 genomes] |
| rs4888077 | 1.00[AMR][1000 genomes] |
| rs4889069 | 0.91[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4889078 | 1.00[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4889080 | 0.83[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4889082 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4889085 | 1.00[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4889094 | 0.83[AMR][1000 genomes] |
| rs4889101 | 1.00[AMR][1000 genomes] |
| rs4889103 | 1.00[AMR][1000 genomes] |
| rs4889104 | 1.00[AMR][1000 genomes] |
| rs59263895 | 0.88[ASN][1000 genomes] |
| rs73573920 | 0.91[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs73573922 | 0.91[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs8063394 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv573285 | chr16:79158182-80127326 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv573294 | chr16:80005642-80131944 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:80081000-80092200 | Weak transcription | Right Atrium | heart |
| 2 | chr16:80085600-80089400 | Weak transcription | Ovary | ovary |
| 3 | chr16:80087400-80088200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
