Variant report

Variant	rs4889080
Chromosome Location	chr16:80078984-80078985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80061826..80063381-chr16:80077866..80079603,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12051173	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs12325508	1.00[CHB][hapmap]
rs16944260	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16944264	0.83[AMR][1000 genomes]
rs16952080	1.00[CHB][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16952105	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16952121	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16952193	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16952202	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16952283	0.83[AMR][1000 genomes]
rs16952289	0.83[AMR][1000 genomes]
rs16952348	0.83[AMR][1000 genomes]
rs16952365	0.83[AMR][1000 genomes]
rs16952392	0.83[AMR][1000 genomes]
rs16952422	0.83[AMR][1000 genomes]
rs16952526	0.83[AMR][1000 genomes]
rs4134367	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4888068	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes]
rs4888071	0.83[AMR][1000 genomes]
rs4888076	0.83[AMR][1000 genomes]
rs4888077	0.83[AMR][1000 genomes]
rs4889069	0.81[ASN][1000 genomes]
rs4889078	0.83[AMR][1000 genomes]
rs4889082	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4889085	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4889101	0.83[AMR][1000 genomes]
rs4889103	0.83[AMR][1000 genomes]
rs4889104	0.83[AMR][1000 genomes]
rs59263895	0.81[ASN][1000 genomes]
rs73573920	0.88[ASN][1000 genomes]
rs73573922	0.88[ASN][1000 genomes]
rs8063394	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80072800-80085200	Weak transcription	Esophagus	oesophagus
2	chr16:80075000-80079600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr16:80076000-80079600	Weak transcription	Fetal Intestine Large	intestine
4	chr16:80076400-80081200	Enhancers	Ovary	ovary
5	chr16:80078200-80079200	Weak transcription	Fetal Stomach	stomach

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