Variant report

Variant	rs58599638
Chromosome Location	chr14:81055689-81055690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57127927	1.00[AMR][1000 genomes]
rs57644214	1.00[AMR][1000 genomes]
rs58687069	1.00[AMR][1000 genomes]
rs58804464	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59450199	1.00[AMR][1000 genomes]
rs59619003	1.00[AMR][1000 genomes]
rs60698271	1.00[AMR][1000 genomes]
rs60764374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61216637	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61336262	1.00[AMR][1000 genomes]
rs61345181	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61419086	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064279	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv902116	chr14:81018237-81082400	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81052400-81070000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:81052800-81057200	Weak transcription	Hela-S3	cervix
3	chr14:81054200-81056400	Weak transcription	Primary T cells from cord blood	blood
4	chr14:81054400-81061400	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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