Variant report

Variant	rs61216637
Chromosome Location	chr14:81072782-81072783
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57127927	1.00[AMR][1000 genomes]
rs57644214	1.00[AMR][1000 genomes]
rs58599638	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58687069	1.00[AMR][1000 genomes]
rs58804464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59450199	1.00[AMR][1000 genomes]
rs59619003	1.00[AMR][1000 genomes]
rs60698271	1.00[AMR][1000 genomes]
rs60764374	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61336262	1.00[AMR][1000 genomes]
rs61345181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61419086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74064279	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv902116	chr14:81018237-81082400	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81062200-81082200	Weak transcription	Dnd41	blood
2	chr14:81069600-81073800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:81071800-81073000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:81072000-81072800	Enhancers	Rectal Smooth Muscle	rectum
5	chr14:81072000-81073000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:81072000-81073000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr14:81072000-81073000	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr14:81072000-81073000	Enhancers	Fetal Lung	lung
9	chr14:81072000-81073200	Enhancers	Brain Hippocampus Middle	brain
10	chr14:81072200-81075800	Weak transcription	Ovary	ovary
11	chr14:81072200-81075800	Weak transcription	NHLF	lung
12	chr14:81072400-81073000	Enhancers	Brain Substantia Nigra	brain
13	chr14:81072600-81072800	Enhancers	Stomach Mucosa	stomach
14	chr14:81072600-81073000	Enhancers	Brain Cingulate Gyrus	brain
15	chr14:81072600-81073000	Enhancers	A549	lung
16	chr14:81072600-81073200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr14:81072600-81073200	Enhancers	Brain Angular Gyrus	brain
18	chr14:81072600-81073200	Enhancers	Fetal Brain Male	brain
19	chr14:81072600-81074800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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