Variant report

Variant	rs60698271
Chromosome Location	chr14:81105013-81105014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57127927	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57644214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58599638	1.00[AMR][1000 genomes]
rs58687069	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58804464	1.00[AMR][1000 genomes]
rs59450199	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59619003	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60764374	1.00[AMR][1000 genomes]
rs61216637	1.00[AMR][1000 genomes]
rs61336262	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61345181	1.00[AMR][1000 genomes]
rs61419086	1.00[AMR][1000 genomes]
rs74064279	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81083400-81109400	Weak transcription	Dnd41	blood
2	chr14:81099000-81106200	Weak transcription	Psoas Muscle	Psoas
3	chr14:81099000-81109600	Weak transcription	Thymus	Thymus
4	chr14:81100400-81105600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:81103200-81106400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:81103800-81105800	Enhancers	Osteobl	bone
7	chr14:81103800-81106400	Enhancers	Hela-S3	cervix
8	chr14:81104000-81105200	Enhancers	HSMMtube	muscle
9	chr14:81104000-81105400	Enhancers	NHDF-Ad	bronchial
10	chr14:81104000-81105800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr14:81104000-81106200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr14:81104200-81105400	Enhancers	HSMM	muscle
13	chr14:81104200-81105800	Enhancers	NHLF	lung
14	chr14:81104200-81106000	Enhancers	NH-A	brain
15	chr14:81104200-81106200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:81104200-81106200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr14:81104400-81105800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr14:81104600-81105200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr14:81104600-81105200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:81104600-81105200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr14:81104600-81105400	Enhancers	HMEC	breast
22	chr14:81104600-81106200	Enhancers	NHEK	skin
23	chr14:81104800-81105400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr14:81104800-81106200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr14:81104800-81106400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr14:81104800-81106600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr14:81105000-81105200	Enhancers	HUVEC	blood vessel
28	chr14:81105000-81105600	Active TSS	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links