Variant report

Variant	rs59450199
Chromosome Location	chr14:81016375-81016376
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10131089	1.00[EUR][1000 genomes]
rs57127927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57644214	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58599638	1.00[AMR][1000 genomes]
rs58687069	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58804464	1.00[AMR][1000 genomes]
rs58879257	1.00[EUR][1000 genomes]
rs59619003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60698271	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60764374	1.00[AMR][1000 genomes]
rs61216637	1.00[AMR][1000 genomes]
rs61336262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61345181	1.00[AMR][1000 genomes]
rs61419086	1.00[AMR][1000 genomes]
rs74064241	1.00[EUR][1000 genomes]
rs74064279	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81013200-81023800	Weak transcription	Dnd41	blood
2	chr14:81015400-81016400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:81015400-81016400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr14:81016000-81016400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:81016000-81016400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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