Variant report

Variant	rs586059
Chromosome Location	chr19:39532559-39532560
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1268251	0.82[ASN][1000 genomes]
rs472104	0.83[ASN][1000 genomes]
rs473729	0.82[ASN][1000 genomes]
rs473878	0.81[ASN][1000 genomes]
rs476616	0.83[ASN][1000 genomes]
rs479001	0.82[ASN][1000 genomes]
rs4802012	0.89[ASN][1000 genomes]
rs485226	0.81[ASN][1000 genomes]
rs497378	0.83[ASN][1000 genomes]
rs533573	0.82[ASN][1000 genomes]
rs536244	0.82[ASN][1000 genomes]
rs580494	0.81[ASN][1000 genomes]
rs601966	0.90[ASN][1000 genomes]
rs603268	0.90[ASN][1000 genomes]
rs631879	0.83[ASN][1000 genomes]
rs631952	0.82[ASN][1000 genomes]
rs646580	0.81[ASN][1000 genomes]
rs650450	0.90[ASN][1000 genomes]
rs7254745	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963126	chr19:39521120-39552490	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2760517	chr19:39530012-39544234	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39523400-39535400	Weak transcription	Right Atrium	heart
2	chr19:39530800-39543000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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