Variant report

Variant	rs650450
Chromosome Location	chr19:39529773-39529774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:39528736..39531074-chr19:39534796..39537090,2	K562	blood:
2	chr19:39451089..39454157-chr19:39527302..39529882,3	MCF-7	breast:
3	chr19:39527434..39530385-chr19:39532161..39533802,2	K562	blood:
4	chr19:39519377..39524107-chr19:39526689..39529929,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000161243	Chromatin interaction
ENSG00000267992	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10410965	0.86[ASN][1000 genomes]
rs11666514	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12150941	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1268251	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12978285	0.82[ASN][1000 genomes]
rs1672647	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2012598	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2081994	0.84[ASN][1000 genomes]
rs2081995	0.84[ASN][1000 genomes]
rs2318895	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2318896	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2873835	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2873836	0.81[ASN][1000 genomes]
rs34640039	0.81[ASN][1000 genomes]
rs472104	0.92[ASN][1000 genomes]
rs473729	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs473878	0.90[ASN][1000 genomes]
rs476616	0.92[ASN][1000 genomes]
rs479001	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4802004	0.81[ASN][1000 genomes]
rs4802012	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4803179	0.84[ASN][1000 genomes]
rs4803180	0.83[ASN][1000 genomes]
rs4803184	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs485226	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs497378	0.92[ASN][1000 genomes]
rs533573	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs536244	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs580494	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs586059	0.90[ASN][1000 genomes]
rs600128	0.82[ASN][1000 genomes]
rs601966	0.95[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603268	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs629685	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs631879	0.92[ASN][1000 genomes]
rs631952	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs646580	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs672576	0.86[ASN][1000 genomes]
rs7254745	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7258182	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73043568	0.85[ASN][1000 genomes]
rs73047946	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8103036	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8103319	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8105050	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8109914	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963126	chr19:39521120-39552490	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39523400-39535400	Weak transcription	Right Atrium	heart
2	chr19:39526800-39531400	Enhancers	Fetal Intestine Large	intestine
3	chr19:39528600-39530800	Enhancers	Fetal Intestine Small	intestine

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