Variant report

Variant	rs2873835
Chromosome Location	chr19:39506698-39506699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10410965	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11666514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12150941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1268251	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12978285	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2081994	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2081995	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2318895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2318896	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2873834	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2873836	0.94[ASN][1000 genomes]
rs34640039	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4305198	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs473729	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs479001	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4802004	0.94[ASN][1000 genomes]
rs4802012	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4803179	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4803180	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4803184	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs485226	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs533573	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs536244	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs580494	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs601966	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs603268	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs631952	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs646580	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs650450	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7258182	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73047946	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8105050	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8109914	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39481000-39516000	Weak transcription	Brain Angular Gyrus	brain
2	chr19:39487200-39518200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr19:39496600-39515800	Weak transcription	Ovary	ovary
4	chr19:39498400-39516600	Weak transcription	A549	lung
5	chr19:39499400-39516600	Weak transcription	Brain Anterior Caudate	brain
6	chr19:39499800-39516800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr19:39500000-39515600	Weak transcription	Brain Substantia Nigra	brain
8	chr19:39501600-39514800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr19:39501800-39515800	Weak transcription	Adipose Nuclei	Adipose
10	chr19:39502000-39506800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr19:39502000-39515400	Weak transcription	Fetal Intestine Small	intestine
12	chr19:39502200-39515600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr19:39502400-39518000	Weak transcription	Aorta	Aorta
14	chr19:39503000-39515400	Weak transcription	Brain Hippocampus Middle	brain
15	chr19:39503600-39520200	Weak transcription	Liver	Liver
16	chr19:39504800-39515800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr19:39505200-39514800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr19:39505200-39515600	Weak transcription	Esophagus	oesophagus
19	chr19:39505400-39506800	Weak transcription	GM12878-XiMat	blood
20	chr19:39505400-39514800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr19:39506600-39506800	Strong transcription	Brain Inferior Temporal Lobe	brain

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