Variant report

Variant	rs7258182
Chromosome Location	chr19:39520928-39520929
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:39520454-39524689	PANC-1	pancreas:	n/a	n/a
2	POLR2A	chr19:39519979-39524546	PANC-1	pancreas:	n/a	n/a

Variant related genes	Relation type
ENSG00000267992	TF binding region
FBXO27	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10410965	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11666514	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12150941	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1268240	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1268251	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12978285	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12982349	0.87[YRI][hapmap]
rs2081994	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2081995	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2318895	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2318896	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2873834	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2873835	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2873836	0.91[ASN][1000 genomes]
rs34640039	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4305198	0.92[EUR][1000 genomes]
rs472104	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs473729	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs473878	0.90[CHB][hapmap];0.80[ASN][1000 genomes]
rs476616	0.81[ASN][1000 genomes]
rs479001	0.90[ASN][1000 genomes]
rs4802004	0.91[ASN][1000 genomes]
rs4802012	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4803179	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4803180	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4803184	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs485226	0.89[ASN][1000 genomes]
rs497378	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs533573	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs536244	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs580494	0.89[ASN][1000 genomes]
rs601966	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs603268	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs631879	0.81[ASN][1000 genomes]
rs631952	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs646580	0.89[ASN][1000 genomes]
rs650450	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6508841	0.87[YRI][hapmap]
rs7247817	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs7254745	0.83[ASN][1000 genomes]
rs73047946	0.81[ASN][1000 genomes]
rs8105050	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8109914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39513000-39521600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr19:39513000-39521600	Weak transcription	Right Atrium	heart
3	chr19:39514000-39521400	Weak transcription	Pancreas	Pancrea
4	chr19:39514000-39522200	Weak transcription	Gastric	stomach
5	chr19:39514400-39521600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr19:39514400-39521800	Weak transcription	Colon Smooth Muscle	Colon
7	chr19:39514600-39521400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr19:39515200-39521600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr19:39516200-39521000	Weak transcription	K562	blood
10	chr19:39516200-39521600	Weak transcription	Right Ventricle	heart
11	chr19:39516400-39522200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr19:39518000-39521200	Weak transcription	Placenta	Placenta
13	chr19:39518200-39521400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr19:39518200-39521600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr19:39518200-39521600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr19:39518200-39521600	Weak transcription	Esophagus	oesophagus
17	chr19:39518200-39521600	Weak transcription	Left Ventricle	heart
18	chr19:39518200-39521600	Weak transcription	NHEK	skin
19	chr19:39518200-39521800	Weak transcription	Lung	lung
20	chr19:39518400-39521000	Weak transcription	Adipose Nuclei	Adipose
21	chr19:39518400-39521400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr19:39518400-39521400	Weak transcription	Fetal Stomach	stomach
23	chr19:39518400-39521400	Weak transcription	HMEC	breast
24	chr19:39518400-39521600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr19:39518400-39521600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr19:39518400-39521600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr19:39518400-39521600	Weak transcription	Brain Germinal Matrix	brain
28	chr19:39518400-39521600	Weak transcription	Fetal Kidney	kidney
29	chr19:39518400-39521600	Weak transcription	Fetal Lung	lung
30	chr19:39518400-39521600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr19:39518400-39521800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr19:39518400-39522000	Weak transcription	Aorta	Aorta
33	chr19:39518400-39522000	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr19:39518600-39521200	Weak transcription	Fetal Heart	heart
35	chr19:39518600-39521400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr19:39518600-39521400	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr19:39518600-39521400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr19:39518600-39521600	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr19:39518600-39521600	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr19:39518600-39521600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr19:39518600-39521600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr19:39518600-39521600	Weak transcription	Brain Anterior Caudate	brain
43	chr19:39518600-39521600	Weak transcription	Brain Substantia Nigra	brain
44	chr19:39518600-39521800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr19:39518600-39522000	Weak transcription	Ovary	ovary
46	chr19:39518800-39521600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr19:39518800-39521600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr19:39518800-39521600	Weak transcription	NHDF-Ad	bronchial
49	chr19:39519000-39521000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr19:39519000-39521400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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