Variant report

Variant	rs485226
Chromosome Location	chr19:39497767-39497768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:39469273..39472050-chr19:39495885..39497816,2	MCF-7	breast:
2	chr19:39495984..39498024-chr19:39498280..39501275,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10410965	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11666514	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12150941	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1268245	0.82[AMR][1000 genomes]
rs1268251	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12978285	0.88[ASN][1000 genomes]
rs2012598	0.82[EUR][1000 genomes]
rs2081994	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2081995	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2318895	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2318896	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2873834	0.85[ASN][1000 genomes]
rs2873835	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2873836	0.86[ASN][1000 genomes]
rs34640039	0.86[ASN][1000 genomes]
rs4305198	0.83[EUR][1000 genomes]
rs472104	0.83[ASN][1000 genomes]
rs473729	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs473878	0.81[ASN][1000 genomes]
rs476616	0.83[ASN][1000 genomes]
rs479001	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4802004	0.86[ASN][1000 genomes]
rs4802012	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4803179	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4803180	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4803184	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs497378	0.83[ASN][1000 genomes]
rs533573	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs536244	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs580494	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs586059	0.81[ASN][1000 genomes]
rs601966	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs603268	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs629685	0.82[EUR][1000 genomes]
rs631879	0.83[ASN][1000 genomes]
rs631952	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs646580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs650450	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7247817	0.84[ASN][1000 genomes]
rs7254745	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7258182	0.89[ASN][1000 genomes]
rs73047946	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8105050	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8109914	0.89[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39480000-39503400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:39481000-39516000	Weak transcription	Brain Angular Gyrus	brain
3	chr19:39487200-39518200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr19:39494600-39503400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr19:39496600-39504400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr19:39496600-39515800	Weak transcription	Ovary	ovary
7	chr19:39497200-39498000	Flanking Active TSS	GM12878-XiMat	blood
8	chr19:39497400-39498200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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