Variant report

Variant	rs4802012
Chromosome Location	chr19:39532807-39532808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:39527434..39530385-chr19:39532161..39533802,2	K562	blood:
2	chr19:39531425..39533053-chr19:39537325..39539768,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10410965	0.84[ASN][1000 genomes]
rs11666514	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12150941	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1268251	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12978285	0.80[ASN][1000 genomes]
rs1672647	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2012598	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2081994	0.83[ASN][1000 genomes]
rs2081995	0.83[ASN][1000 genomes]
rs2318895	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2318896	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2873835	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4305198	0.80[EUR][1000 genomes]
rs472104	0.90[ASN][1000 genomes]
rs473729	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs473878	0.89[ASN][1000 genomes]
rs476616	0.90[ASN][1000 genomes]
rs479001	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4803179	0.83[ASN][1000 genomes]
rs4803180	0.82[ASN][1000 genomes]
rs4803184	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs485226	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs497378	0.90[ASN][1000 genomes]
rs533573	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs536244	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs580494	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs586059	0.89[ASN][1000 genomes]
rs600128	0.81[ASN][1000 genomes]
rs601966	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs603268	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs629685	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs631879	0.90[ASN][1000 genomes]
rs631952	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs646580	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs650450	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs672576	0.85[ASN][1000 genomes]
rs7254745	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7258182	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73043568	0.83[ASN][1000 genomes]
rs73047946	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8103036	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8103319	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8105050	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8109914	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963126	chr19:39521120-39552490	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2760517	chr19:39530012-39544234	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39523400-39535400	Weak transcription	Right Atrium	heart
2	chr19:39530800-39543000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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