Variant report

Variant	rs10410965
Chromosome Location	chr19:39498198-39498199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:39466032..39468066-chr19:39497935..39500825,2	K562	blood:

Variant related genes	Relation type
ENSG00000269190	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11666514	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12150941	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1268240	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap]
rs1268251	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12978285	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2081994	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2081995	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2318895	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2318896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2873834	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2873835	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2873836	0.94[ASN][1000 genomes]
rs34640039	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4305198	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs472104	0.90[CHB][hapmap];0.95[CHD][hapmap]
rs473729	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs473878	0.90[CHB][hapmap];0.95[CHD][hapmap]
rs479001	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4802004	0.94[ASN][1000 genomes]
rs4802012	0.84[ASN][1000 genomes]
rs4803179	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4803180	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4803184	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs485226	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs497378	0.90[CHB][hapmap]
rs533573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs536244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs580494	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs601966	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs603268	0.86[ASN][1000 genomes]
rs631952	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs646580	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs650450	0.86[ASN][1000 genomes]
rs7247817	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7258182	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73047946	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8105050	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8109914	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10410965	BLOC1S3	cis	cerebellum	SCAN
rs10410965	LOC390940	cis	cerebellum	SCAN
rs10410965	PSG3	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39480000-39503400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:39481000-39516000	Weak transcription	Brain Angular Gyrus	brain
3	chr19:39487200-39518200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr19:39494600-39503400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr19:39496600-39504400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr19:39496600-39515800	Weak transcription	Ovary	ovary
7	chr19:39497400-39498200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr19:39498000-39498600	Enhancers	GM12878-XiMat	blood

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