Variant report

Variant	rs1268240
Chromosome Location	chr19:39489759-39489760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10410965	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11666514	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12150941	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1268245	0.81[AMR][1000 genomes]
rs1268251	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12978285	0.83[ASN][1000 genomes]
rs2012598	0.81[EUR][1000 genomes]
rs2081994	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2081995	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2318895	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2318896	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2873834	0.81[ASN][1000 genomes]
rs2873835	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2873836	0.82[ASN][1000 genomes]
rs34640039	0.82[ASN][1000 genomes]
rs4305198	0.84[EUR][1000 genomes]
rs472104	0.90[CHB][hapmap];0.95[CHD][hapmap];0.83[JPT][hapmap]
rs473729	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs473878	0.90[CHB][hapmap];0.95[CHD][hapmap];0.83[JPT][hapmap]
rs479001	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4802004	0.82[ASN][1000 genomes]
rs4802012	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4803179	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4803180	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4803184	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs485226	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs497378	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs533573	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs536244	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs580494	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs601966	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs603268	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs607292	0.81[ASN][1000 genomes]
rs629685	0.81[EUR][1000 genomes]
rs631952	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs646580	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs650450	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7247817	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs7258182	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs7258469	0.81[ASN][1000 genomes]
rs73047946	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73541562	0.81[ASN][1000 genomes]
rs8105050	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8109914	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39480000-39503400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:39481000-39516000	Weak transcription	Brain Angular Gyrus	brain
3	chr19:39487200-39518200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr19:39489400-39489800	Enhancers	Adipose Nuclei	Adipose
5	chr19:39489400-39490000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr19:39489600-39489800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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