The 2.0 version of rSNPBase

Variant report

Variant rs58621288
Chromosome Location chr3:50000753-50000754
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:109 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:49978800-50004800 Weak transcription HUES6 Cell Line embryonic stem cell
2 chr3:49978800-50009600 Weak transcription H1 Cell Line embryonic stem cell
3 chr3:49978800-50009600 Weak transcription Fetal Kidney kidney
4 chr3:49978800-50041000 Weak transcription H9 Cell Line embryonic stem cell
5 chr3:49979000-50001000 Weak transcription Rectal Mucosa Donor 29 rectum
6 chr3:49979000-50003400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr3:49979000-50003600 Weak transcription Right Ventricle heart
8 chr3:49979000-50005200 Weak transcription Fetal Muscle Trunk muscle
9 chr3:49979000-50010200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr3:49979600-50004200 Weak transcription Primary hematopoietic stem cells blood
11 chr3:49980400-50003600 Weak transcription Brain Angular Gyrus brain
12 chr3:49980600-50001800 Weak transcription HUES48 Cell Line embryonic stem cell
13 chr3:49983800-50003400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr3:49988000-50003000 Weak transcription NHEK skin
15 chr3:49988000-50003600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
16 chr3:49988000-50004200 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr3:49988200-50007000 Weak transcription Primary T helper naive cells fromperipheralblood blood
18 chr3:49988200-50007400 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr3:49988200-50010200 Weak transcription Gastric stomach
20 chr3:49988200-50010600 Weak transcription Primary T helper naive cells from peripheral blood blood
21 chr3:49988400-50001200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr3:49988400-50001200 Weak transcription Duodenum Smooth Muscle Duodenum
23 chr3:49988400-50001800 Weak transcription HSMM muscle
24 chr3:49988400-50009600 Weak transcription Fetal Brain Female brain
25 chr3:49988400-50009600 Weak transcription HUVEC blood vessel
26 chr3:49988600-50001000 Weak transcription GM12878-XiMat blood
27 chr3:49988600-50001000 Weak transcription Hela-S3 cervix
28 chr3:49988800-50000800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr3:49988800-50004800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
30 chr3:49989000-50004000 Weak transcription Pancreas Pancrea
31 chr3:49989800-50001400 Weak transcription iPS-18 Cell Line embryonic stem cell
32 chr3:49991200-50005800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
33 chr3:49992200-50037000 Weak transcription Primary T killer naive cells fromperipheralblood blood
34 chr3:49995000-50005200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
35 chr3:49995400-50001000 Weak transcription Primary T helper cells PMA-I stimulated --
36 chr3:49995400-50001000 Weak transcription Liver Liver
37 chr3:49995400-50001200 Weak transcription Breast Myoepithelial Primary Cells Breast
38 chr3:49995400-50001600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
39 chr3:49995400-50033200 Weak transcription Fetal Brain Male brain
40 chr3:49995600-50005800 Weak transcription Spleen Spleen
41 chr3:49996200-50000800 Weak transcription Primary T cells fromperipheralblood blood
42 chr3:49996400-50003600 Weak transcription HMEC breast
43 chr3:49996600-50010200 Weak transcription Lung lung
44 chr3:49997000-50010600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
45 chr3:49997600-50000800 Weak transcription Skeletal Muscle Female skeletal muscle
46 chr3:49997600-50002600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr3:49997600-50007400 Weak transcription Right Atrium heart
48 chr3:49997600-50009600 Weak transcription A549 lung
49 chr3:49997800-50003600 Weak transcription Cortex derived primary cultured neurospheres brain
50 chr3:49997800-50003600 Weak transcription Brain Substantia Nigra brain

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Last update: Aug 31, 2015