The 2.0 version of rSNPBase

Variant report

Variant rs62262116
Chromosome Location chr3:50001152-50001153
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:109 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:49978800-50004800 Weak transcription HUES6 Cell Line embryonic stem cell
2 chr3:49978800-50009600 Weak transcription H1 Cell Line embryonic stem cell
3 chr3:49978800-50009600 Weak transcription Fetal Kidney kidney
4 chr3:49978800-50041000 Weak transcription H9 Cell Line embryonic stem cell
5 chr3:49979000-50003400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
6 chr3:49979000-50003600 Weak transcription Right Ventricle heart
7 chr3:49979000-50005200 Weak transcription Fetal Muscle Trunk muscle
8 chr3:49979000-50010200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr3:49979600-50004200 Weak transcription Primary hematopoietic stem cells blood
10 chr3:49980400-50003600 Weak transcription Brain Angular Gyrus brain
11 chr3:49980600-50001800 Weak transcription HUES48 Cell Line embryonic stem cell
12 chr3:49983800-50003400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
13 chr3:49988000-50003000 Weak transcription NHEK skin
14 chr3:49988000-50003600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr3:49988000-50004200 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr3:49988200-50007000 Weak transcription Primary T helper naive cells fromperipheralblood blood
17 chr3:49988200-50007400 Weak transcription Rectal Mucosa Donor 31 rectum
18 chr3:49988200-50010200 Weak transcription Gastric stomach
19 chr3:49988200-50010600 Weak transcription Primary T helper naive cells from peripheral blood blood
20 chr3:49988400-50001200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr3:49988400-50001200 Weak transcription Duodenum Smooth Muscle Duodenum
22 chr3:49988400-50001800 Weak transcription HSMM muscle
23 chr3:49988400-50009600 Weak transcription Fetal Brain Female brain
24 chr3:49988400-50009600 Weak transcription HUVEC blood vessel
25 chr3:49988800-50004800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
26 chr3:49989000-50004000 Weak transcription Pancreas Pancrea
27 chr3:49989800-50001400 Weak transcription iPS-18 Cell Line embryonic stem cell
28 chr3:49991200-50005800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr3:49992200-50037000 Weak transcription Primary T killer naive cells fromperipheralblood blood
30 chr3:49995000-50005200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
31 chr3:49995400-50001200 Weak transcription Breast Myoepithelial Primary Cells Breast
32 chr3:49995400-50001600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
33 chr3:49995400-50033200 Weak transcription Fetal Brain Male brain
34 chr3:49995600-50005800 Weak transcription Spleen Spleen
35 chr3:49996400-50003600 Weak transcription HMEC breast
36 chr3:49996600-50010200 Weak transcription Lung lung
37 chr3:49997000-50010600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
38 chr3:49997600-50002600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr3:49997600-50007400 Weak transcription Right Atrium heart
40 chr3:49997600-50009600 Weak transcription A549 lung
41 chr3:49997800-50003600 Weak transcription Cortex derived primary cultured neurospheres brain
42 chr3:49997800-50003600 Weak transcription Brain Substantia Nigra brain
43 chr3:49997800-50004000 Weak transcription Brain Anterior Caudate brain
44 chr3:49997800-50004000 Weak transcription Left Ventricle heart
45 chr3:49997800-50009600 Weak transcription Primary T killer memory cells from peripheral blood blood
46 chr3:49997800-50009800 Weak transcription iPS-15b Cell Line embryonic stem cell
47 chr3:49997800-50013800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr3:49998000-50078200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
49 chr3:49998200-50001200 Weak transcription Colon Smooth Muscle Colon
50 chr3:49998200-50001400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood

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Last update: Aug 31, 2015