Variant report

Variant	rs58631398
Chromosome Location	chr14:31742850-31742851
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10129177	1.00[AMR][1000 genomes]
rs10129821	1.00[AMR][1000 genomes]
rs10130507	1.00[AMR][1000 genomes]
rs10135068	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10135482	0.84[AFR][1000 genomes]
rs10140697	1.00[AMR][1000 genomes]
rs10146567	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148704	0.94[AFR][1000 genomes]
rs10151215	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10151624	0.82[AFR][1000 genomes]
rs1111724	1.00[AMR][1000 genomes]
rs11844137	1.00[AMR][1000 genomes]
rs1952105	1.00[AMR][1000 genomes]
rs28460801	0.84[AFR][1000 genomes]
rs28548120	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28591281	1.00[AMR][1000 genomes]
rs28606430	1.00[AMR][1000 genomes]
rs28623024	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28729913	0.97[AFR][1000 genomes]
rs28793570	0.94[AFR][1000 genomes]
rs4981094	1.00[AMR][1000 genomes]
rs58291808	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61414525	1.00[AMR][1000 genomes]
rs7359020	1.00[AMR][1000 genomes]
rs8010938	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901587	chr14:31501505-31752664	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31735400-31743200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr14:31735400-31743400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr14:31735600-31743400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr14:31739200-31743200	Weak transcription	Osteobl	bone
5	chr14:31740000-31743200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:31740000-31746200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr14:31740000-31746200	Weak transcription	Esophagus	oesophagus
8	chr14:31740800-31743800	Enhancers	HepG2	liver
9	chr14:31741800-31743400	Weak transcription	Fetal Intestine Small	intestine
10	chr14:31742000-31743400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:31742000-31743600	Enhancers	GM12878-XiMat	blood
12	chr14:31742200-31743200	Weak transcription	Stomach Mucosa	stomach
13	chr14:31742600-31743800	Enhancers	NHDF-Ad	bronchial
14	chr14:31742600-31744000	Enhancers	HUVEC	blood vessel
15	chr14:31742800-31743800	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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