Variant report

Variant	rs58291808
Chromosome Location	chr14:31765770-31765771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31676075..31678672-chr14:31762888..31766757,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000092148	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10129177	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10130006	0.81[AFR][1000 genomes]
rs10130507	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10135068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10136175	0.81[AFR][1000 genomes]
rs10140697	1.00[AMR][1000 genomes]
rs10146567	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150602	0.81[AFR][1000 genomes]
rs10151215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10151624	0.97[AFR][1000 genomes]
rs10151837	0.84[AFR][1000 genomes]
rs1111724	1.00[AMR][1000 genomes]
rs11844137	1.00[AMR][1000 genomes]
rs1952105	1.00[AMR][1000 genomes]
rs28548120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28591281	1.00[AMR][1000 genomes]
rs28623024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28637251	0.81[AFR][1000 genomes]
rs28729913	0.81[AFR][1000 genomes]
rs4981094	1.00[AMR][1000 genomes]
rs58631398	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61414525	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7359020	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8010938	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31749400-31789000	Weak transcription	Psoas Muscle	Psoas
2	chr14:31753200-31766400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:31753200-31768000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr14:31753200-31769400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr14:31753200-31776600	Weak transcription	Aorta	Aorta
6	chr14:31753400-31767800	Weak transcription	Brain Hippocampus Middle	brain
7	chr14:31753400-31769400	Weak transcription	Brain Anterior Caudate	brain
8	chr14:31753400-31769400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr14:31753400-31774000	Weak transcription	NHDF-Ad	bronchial
10	chr14:31753600-31772600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr14:31755200-31769400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr14:31756200-31767800	Weak transcription	Left Ventricle	heart
13	chr14:31756200-31769800	Weak transcription	Liver	Liver
14	chr14:31756400-31769600	Weak transcription	Lung	lung
15	chr14:31756600-31769200	Weak transcription	Spleen	Spleen
16	chr14:31757200-31769200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr14:31757200-31769400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr14:31757800-31769400	Weak transcription	Fetal Muscle Leg	muscle
19	chr14:31758000-31775600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr14:31759200-31769200	Weak transcription	Primary T cells from cord blood	blood
21	chr14:31759600-31769400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr14:31759800-31766800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr14:31759800-31769400	Weak transcription	Fetal Brain Male	brain
24	chr14:31760000-31765800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr14:31760200-31769200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr14:31760600-31767800	Weak transcription	Brain Angular Gyrus	brain
27	chr14:31760600-31779400	Weak transcription	Pancreas	Pancrea
28	chr14:31760800-31768000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr14:31760800-31769200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr14:31760800-31769200	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr14:31760800-31771400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr14:31760800-31772800	Weak transcription	Primary B cells from peripheral blood	blood
33	chr14:31760800-31773200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr14:31760800-31774000	Weak transcription	Primary B cells from cord blood	blood
35	chr14:31760800-31776400	Weak transcription	Stomach Mucosa	stomach
36	chr14:31760800-31781000	Weak transcription	Fetal Kidney	kidney
37	chr14:31761000-31769200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr14:31761000-31769200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr14:31761000-31770600	Weak transcription	A549	lung
40	chr14:31761200-31766400	Weak transcription	Fetal Stomach	stomach
41	chr14:31761200-31766400	Weak transcription	Ovary	ovary
42	chr14:31761200-31771200	Weak transcription	Fetal Intestine Large	intestine
43	chr14:31761400-31766400	Weak transcription	Fetal Muscle Trunk	muscle
44	chr14:31761400-31769600	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr14:31761400-31769600	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr14:31761400-31771200	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr14:31761600-31769400	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr14:31761600-31770600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr14:31761600-31794400	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr14:31761600-31794400	Strong transcription	Monocytes-CD14+_RO01746	blood

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