Variant report

Variant	rs8010938
Chromosome Location	chr14:31805220-31805221
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31674459..31678432-chr14:31805100..31811566,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000092148	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10129177	1.00[AMR][1000 genomes]
rs10130507	1.00[AMR][1000 genomes]
rs10135068	1.00[AMR][1000 genomes]
rs10140697	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146567	1.00[AMR][1000 genomes]
rs10151215	1.00[AMR][1000 genomes]
rs1111724	1.00[AMR][1000 genomes]
rs11844137	1.00[AMR][1000 genomes]
rs1952105	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28548120	1.00[AMR][1000 genomes]
rs28591281	1.00[AMR][1000 genomes]
rs28623024	1.00[AMR][1000 genomes]
rs4981094	1.00[AMR][1000 genomes]
rs58291808	1.00[AMR][1000 genomes]
rs58631398	1.00[AMR][1000 genomes]
rs61414525	1.00[AMR][1000 genomes]
rs7359020	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901589	chr14:31768231-31944723	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31762800-31811800	Weak transcription	Fetal Heart	heart
2	chr14:31768000-31805800	Weak transcription	NHEK	skin
3	chr14:31770000-31812600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr14:31771000-31888800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:31772400-31825200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr14:31774600-31811200	Weak transcription	HUVEC	blood vessel
7	chr14:31782200-31813000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr14:31782200-31814000	Weak transcription	Fetal Kidney	kidney
9	chr14:31782200-31875200	Weak transcription	Gastric	stomach
10	chr14:31782400-31827000	Weak transcription	Aorta	Aorta
11	chr14:31787200-31809200	Weak transcription	NHLF	lung
12	chr14:31789800-31805800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr14:31789800-31806800	Weak transcription	Psoas Muscle	Psoas
14	chr14:31791200-31812600	Weak transcription	Colon Smooth Muscle	Colon
15	chr14:31791600-31806000	Weak transcription	NHDF-Ad	bronchial
16	chr14:31796800-31808800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr14:31797000-31809000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr14:31798200-31807600	Strong transcription	Osteobl	bone
19	chr14:31799600-31806000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr14:31799600-31827000	Weak transcription	Right Ventricle	heart
21	chr14:31799800-31805400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr14:31799800-31805800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr14:31799800-31808000	Weak transcription	Lung	lung
24	chr14:31799800-31811800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr14:31799800-31814400	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr14:31799800-31815600	Weak transcription	Colonic Mucosa	Colon
27	chr14:31799800-31829600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr14:31799800-31866800	Weak transcription	Esophagus	oesophagus
29	chr14:31800000-31806200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr14:31800200-31839800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr14:31800400-31807400	Strong transcription	Adipose Nuclei	Adipose
32	chr14:31800400-31838200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr14:31800600-31806400	Weak transcription	Primary T cells from cord blood	blood
34	chr14:31800800-31812200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr14:31801000-31812000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr14:31801000-31812800	Weak transcription	HMEC	breast
37	chr14:31801200-31805800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr14:31801200-31810200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr14:31801200-31812600	Weak transcription	Brain Angular Gyrus	brain
40	chr14:31801200-31823400	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr14:31801200-31883800	Weak transcription	Small Intestine	intestine
42	chr14:31801400-31862800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr14:31801400-31875600	Weak transcription	Brain Germinal Matrix	brain
44	chr14:31801600-31805600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr14:31801600-31805600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr14:31801600-31805800	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr14:31801600-31806000	Weak transcription	HSMM	muscle
48	chr14:31801600-31824000	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr14:31801600-31872400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr14:31801800-31805600	Weak transcription	Rectal Mucosa Donor 29	rectum

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