Variant report

Variant	rs10135068
Chromosome Location	chr14:31811137-31811138
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31805474..31808119-chr14:31809576..31811915,2	K562	blood:
2	chr14:31674459..31678432-chr14:31805100..31811566,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000092148	Chromatin interaction
ENSG00000129493	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10129177	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10130006	0.81[AFR][1000 genomes]
rs10130507	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10136175	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10140697	1.00[AMR][1000 genomes]
rs10146567	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150602	0.81[AFR][1000 genomes]
rs10151215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10151624	0.97[AFR][1000 genomes]
rs10151837	0.84[AFR][1000 genomes]
rs1111724	1.00[AMR][1000 genomes]
rs11844137	1.00[AMR][1000 genomes]
rs1952105	1.00[AMR][1000 genomes]
rs28548120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28591281	1.00[AMR][1000 genomes]
rs28623024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28637251	0.81[AFR][1000 genomes]
rs28729913	0.81[AFR][1000 genomes]
rs4981094	1.00[AMR][1000 genomes]
rs58291808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58631398	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61414525	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7359020	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8010938	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901589	chr14:31768231-31944723	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31762800-31811800	Weak transcription	Fetal Heart	heart
2	chr14:31770000-31812600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr14:31771000-31888800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:31772400-31825200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr14:31774600-31811200	Weak transcription	HUVEC	blood vessel
6	chr14:31782200-31813000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr14:31782200-31814000	Weak transcription	Fetal Kidney	kidney
8	chr14:31782200-31875200	Weak transcription	Gastric	stomach
9	chr14:31782400-31827000	Weak transcription	Aorta	Aorta
10	chr14:31791200-31812600	Weak transcription	Colon Smooth Muscle	Colon
11	chr14:31799600-31827000	Weak transcription	Right Ventricle	heart
12	chr14:31799800-31811800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr14:31799800-31814400	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr14:31799800-31815600	Weak transcription	Colonic Mucosa	Colon
15	chr14:31799800-31829600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr14:31799800-31866800	Weak transcription	Esophagus	oesophagus
17	chr14:31800200-31839800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr14:31800400-31838200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr14:31800800-31812200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr14:31801000-31812000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr14:31801000-31812800	Weak transcription	HMEC	breast
22	chr14:31801200-31812600	Weak transcription	Brain Angular Gyrus	brain
23	chr14:31801200-31823400	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr14:31801200-31883800	Weak transcription	Small Intestine	intestine
25	chr14:31801400-31862800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr14:31801400-31875600	Weak transcription	Brain Germinal Matrix	brain
27	chr14:31801600-31824000	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr14:31801600-31872400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr14:31801800-31811600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr14:31801800-31824400	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr14:31801800-31862600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr14:31802400-31825000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr14:31802400-31827200	Weak transcription	Brain Substantia Nigra	brain
34	chr14:31802400-31842800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr14:31802600-31825000	Weak transcription	GM12878-XiMat	blood
36	chr14:31802800-31811600	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr14:31802800-31872000	Weak transcription	Fetal Brain Male	brain
38	chr14:31803200-31811200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr14:31803200-31814200	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr14:31803400-31817600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr14:31803600-31813000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr14:31803600-31813600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr14:31803600-31825000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr14:31803600-31833000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr14:31803600-31872600	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr14:31803800-31811400	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr14:31803800-31811400	Weak transcription	NH-A	brain
48	chr14:31803800-31812000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr14:31803800-31843600	Weak transcription	A549	lung
50	chr14:31803800-31852200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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