Variant report

Variant	rs58638938
Chromosome Location	chr10:49848093-49848094
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1550775	1.00[EUR][1000 genomes]
rs3923678	1.00[EUR][1000 genomes]
rs59338484	1.00[EUR][1000 genomes]
rs59719366	1.00[EUR][1000 genomes]
rs59868190	1.00[EUR][1000 genomes]
rs60670300	1.00[EUR][1000 genomes]
rs6537569	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7077507	1.00[EUR][1000 genomes]
rs7081000	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7084382	1.00[EUR][1000 genomes]
rs7084773	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7090899	1.00[EUR][1000 genomes]
rs74130520	1.00[EUR][1000 genomes]
rs7909038	1.00[EUR][1000 genomes]
rs7909943	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49840200-49848600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:49842000-49859400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:49843400-49862600	Weak transcription	NHLF	lung
4	chr10:49844000-49863400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:49846400-49848200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:49846400-49856000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:49846600-49848200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:49846600-49848400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr10:49846600-49848400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr10:49846600-49856800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:49847200-49848800	Enhancers	HUVEC	blood vessel
12	chr10:49847600-49848200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:49847800-49859600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr10:49847800-49859600	Weak transcription	HSMM	muscle
15	chr10:49848000-49848600	Enhancers	GM12878-XiMat	blood
16	chr10:49848000-49861600	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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