Variant report

Variant	rs1550775
Chromosome Location	chr10:49809038-49809039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49807563..49809582-chr10:49811052..49813456,2	K562	blood:
2	chr10:49807954..49810165-chr10:49813805..49816263,2	K562	blood:

Variant related genes	Relation type
ENSG00000128805	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs28414616	1.00[AMR][1000 genomes]
rs3923678	1.00[EUR][1000 genomes]
rs56792058	1.00[AMR][1000 genomes]
rs57417026	1.00[AMR][1000 genomes]
rs58480554	1.00[AMR][1000 genomes]
rs58638938	1.00[EUR][1000 genomes]
rs59338484	1.00[EUR][1000 genomes]
rs59719366	1.00[EUR][1000 genomes]
rs59868190	1.00[EUR][1000 genomes]
rs60236086	1.00[AMR][1000 genomes]
rs60670300	1.00[EUR][1000 genomes]
rs60709722	1.00[AMR][1000 genomes]
rs6537569	1.00[EUR][1000 genomes]
rs7077507	1.00[EUR][1000 genomes]
rs7081000	1.00[EUR][1000 genomes]
rs7084382	1.00[EUR][1000 genomes]
rs7084773	1.00[EUR][1000 genomes]
rs7088262	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs7090899	1.00[EUR][1000 genomes]
rs73298212	1.00[AMR][1000 genomes]
rs73298215	1.00[AMR][1000 genomes]
rs73298221	1.00[AMR][1000 genomes]
rs73298225	1.00[AMR][1000 genomes]
rs73298237	1.00[AMR][1000 genomes]
rs73303075	1.00[AMR][1000 genomes]
rs74130520	1.00[EUR][1000 genomes]
rs74130585	1.00[AMR][1000 genomes]
rs7893181	1.00[AMR][1000 genomes]
rs7899637	1.00[AMR][1000 genomes]
rs7909038	1.00[EUR][1000 genomes]
rs7909943	1.00[EUR][1000 genomes]
rs7911933	1.00[AMR][1000 genomes]
rs7916864	1.00[AMR][1000 genomes]
rs9732742	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv540623	chr10:49805087-49819765	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv540624	chr10:49805087-49822634	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49794400-49810600	Enhancers	Brain Substantia Nigra	brain
2	chr10:49797400-49812200	Weak transcription	Right Atrium	heart
3	chr10:49800600-49809400	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr10:49803800-49809600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:49804200-49809600	Enhancers	Brain Hippocampus Middle	brain
6	chr10:49804400-49810800	Weak transcription	Gastric	stomach
7	chr10:49804600-49809200	Enhancers	Brain Anterior Caudate	brain
8	chr10:49804800-49809200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:49804800-49809400	Enhancers	Brain Cingulate Gyrus	brain
10	chr10:49805000-49809200	Enhancers	Brain Angular Gyrus	brain
11	chr10:49805600-49811000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:49806000-49810000	Enhancers	NHDF-Ad	bronchial
13	chr10:49806200-49809400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:49807000-49809800	Weak transcription	HSMMtube	muscle
15	chr10:49807000-49811000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:49807600-49809800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:49807600-49811600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:49808000-49810400	Enhancers	HUVEC	blood vessel
19	chr10:49808000-49811400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:49808000-49811800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr10:49808000-49811800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:49808000-49812000	Weak transcription	Ovary	ovary
23	chr10:49808400-49810400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:49808400-49811600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr10:49808800-49809200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:49808800-49809200	Enhancers	Aorta	Aorta
27	chr10:49808800-49809400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:49808800-49809400	Flanking Active TSS	HSMM	muscle
29	chr10:49808800-49809800	Enhancers	NH-A	brain
30	chr10:49808800-49810200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:49808800-49810400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
32	chr10:49808800-49810600	Enhancers	HMEC	breast
33	chr10:49809000-49809200	Flanking Active TSS	Osteobl	bone
34	chr10:49809000-49809400	Transcr. at gene 5' and 3'	NHLF	lung
35	chr10:49809000-49810200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links