Variant report

No.	Distal block	Cell Line	Cell type
1	chr10:49821797..49823802-chr10:49864204..49866000,2	MCF-7	breast:
2	chr10:49814485..49816162-chr10:49819695..49822517,2	MCF-7	breast:
3	chr10:49794436..49796437-chr10:49820833..49823076,2	K562	blood:
4	chr10:49815515..49817850-chr10:49821567..49823368,2	K562	blood:

Variant related genes	Relation type
ENSG00000128805	Chromatin interaction

rSNPs within LD-proxies of this variant (count:19)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv540624	chr10:49805087-49822634	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49813400-49844200	Weak transcription	Pancreas	Pancrea
2	chr10:49814200-49823400	Enhancers	NHDF-Ad	bronchial
3	chr10:49815000-49823000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:49815800-49822200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:49819400-49823200	Enhancers	HMEC	breast
6	chr10:49819600-49822800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:49819600-49823200	Enhancers	HSMM	muscle
8	chr10:49820000-49823000	Enhancers	Osteobl	bone
9	chr10:49820200-49823200	Enhancers	NHLF	lung
10	chr10:49820600-49822800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:49820600-49823000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:49821000-49822600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:49821000-49823400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:49821400-49822600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:49821400-49822600	Weak transcription	NH-A	brain
16	chr10:49821400-49823400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr10:49821600-49822000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:49821600-49822000	Weak transcription	HSMMtube	muscle
19	chr10:49821600-49822800	Enhancers	Brain Substantia Nigra	brain
20	chr10:49821800-49822400	Enhancers	Brain Hippocampus Middle	brain

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