Variant report

Variant	rs74130585
Chromosome Location	chr10:49799591-49799592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49730671..49732812-chr10:49799416..49802228,2	K562	blood:
2	chr10:49798672..49801517-chr10:49802040..49804201,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128805	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1550775	1.00[AMR][1000 genomes]
rs28414616	1.00[AMR][1000 genomes]
rs56792058	1.00[AMR][1000 genomes]
rs57417026	1.00[AMR][1000 genomes]
rs57847218	0.91[AFR][1000 genomes]
rs58480554	1.00[AMR][1000 genomes]
rs60236086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60709722	1.00[AMR][1000 genomes]
rs7088262	1.00[AMR][1000 genomes]
rs73298212	1.00[AMR][1000 genomes]
rs73298215	1.00[AMR][1000 genomes]
rs73298221	1.00[AMR][1000 genomes]
rs73298225	1.00[AMR][1000 genomes]
rs73298237	1.00[AMR][1000 genomes]
rs73303075	1.00[AMR][1000 genomes]
rs74130586	1.00[AFR][1000 genomes]
rs7893181	1.00[AMR][1000 genomes]
rs7899637	1.00[AMR][1000 genomes]
rs7911933	1.00[AMR][1000 genomes]
rs7916864	1.00[AMR][1000 genomes]
rs9732742	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1046588	chr10:49790254-49806169	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49794400-49810600	Enhancers	Brain Substantia Nigra	brain
2	chr10:49795200-49803800	Enhancers	NHDF-Ad	bronchial
3	chr10:49796200-49800600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:49797400-49812200	Weak transcription	Right Atrium	heart
5	chr10:49797800-49802600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:49798000-49799600	Genic enhancers	Muscle Satellite Cultured Cells	--
7	chr10:49798400-49801600	Weak transcription	Brain Anterior Caudate	brain
8	chr10:49798400-49802200	Weak transcription	Esophagus	oesophagus
9	chr10:49798400-49802400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:49798400-49802600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:49798600-49802400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:49798600-49805600	Weak transcription	HSMMtube	muscle
13	chr10:49798800-49800600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:49798800-49801400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr10:49798800-49802400	Weak transcription	NHLF	lung
16	chr10:49798800-49806000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:49798800-49806800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:49798800-49808200	Weak transcription	HMEC	breast
19	chr10:49799200-49800400	Weak transcription	Brain Hippocampus Middle	brain
20	chr10:49799200-49800600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:49799400-49799600	Enhancers	Brain Angular Gyrus	brain
22	chr10:49799400-49799600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:49799400-49799600	Strong transcription	Osteobl	bone
24	chr10:49799400-49800800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:49799400-49802400	Weak transcription	HSMM	muscle
26	chr10:49799400-49803800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr10:49799400-49808000	Weak transcription	HUVEC	blood vessel
28	chr10:49799400-49808800	Weak transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links