Variant report

Variant	rs7893181
Chromosome Location	chr10:49857561-49857562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49759591..49760167-chr10:49857265..49858128,2	MCF-7	breast:
2	chr10:49759543..49760694-chr10:49857359..49858495,4	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1550775	1.00[AMR][1000 genomes]
rs28414616	1.00[AMR][1000 genomes]
rs56792058	1.00[AMR][1000 genomes]
rs57417026	1.00[AMR][1000 genomes]
rs58480554	1.00[AMR][1000 genomes]
rs60236086	1.00[AMR][1000 genomes]
rs60709722	1.00[AMR][1000 genomes]
rs7088262	1.00[AMR][1000 genomes]
rs73298212	1.00[AMR][1000 genomes]
rs73298215	1.00[AMR][1000 genomes]
rs73298221	1.00[AMR][1000 genomes]
rs73298225	1.00[AMR][1000 genomes]
rs73298237	1.00[AMR][1000 genomes]
rs73303075	1.00[AMR][1000 genomes]
rs74130585	1.00[AMR][1000 genomes]
rs7899637	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7911933	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7916864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9732742	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49842000-49859400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:49843400-49862600	Weak transcription	NHLF	lung
3	chr10:49844000-49863400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:49847800-49859600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr10:49847800-49859600	Weak transcription	HSMM	muscle
6	chr10:49848000-49861600	Weak transcription	Osteobl	bone
7	chr10:49850600-49863400	Weak transcription	Pancreas	Pancrea
8	chr10:49852200-49862400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:49853000-49863400	Weak transcription	Right Atrium	heart
10	chr10:49853400-49858800	Weak transcription	Brain Hippocampus Middle	brain
11	chr10:49853800-49863400	Weak transcription	Aorta	Aorta
12	chr10:49854200-49863400	Weak transcription	Brain Angular Gyrus	brain
13	chr10:49854800-49859400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:49855000-49857600	Weak transcription	Right Ventricle	heart
15	chr10:49855000-49862600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:49856200-49863200	Weak transcription	Spleen	Spleen
17	chr10:49856400-49857600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:49856400-49857800	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr10:49856400-49858000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:49856400-49859200	Weak transcription	Brain Substantia Nigra	brain
21	chr10:49856600-49862400	Weak transcription	HMEC	breast
22	chr10:49856800-49857800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:49857200-49857600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell

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