Variant report

Variant	rs7899637
Chromosome Location	chr10:49865051-49865052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr10:49863121-49865128	SK-N-SH	brain:	n/a	chr10:49864471-49864484 chr10:49864454-49864467 chr10:49864406-49864416 chr10:49864470-49864482 chr10:49864472-49864482 chr10:49864108-49864121 chr10:49863692-49863706 chr10:49863461-49863475 chr10:49864468-49864487
2	JUN	chr10:49864118-49865333	K562	blood:	n/a	chr10:49865132-49865143
3	CTCF	chr10:49864980-49865130	GM12864	blood:	n/a	n/a
4	SMC3	chr10:49863289-49865368	SK-N-SH	brain:	n/a	chr10:49864343-49864353 chr10:49864472-49864482 chr10:49864472-49864486
5	MAX	chr10:49864457-49865099	H1-hESC	embryonic stem cell:	n/a	n/a
6	SMC3	chr10:49863963-49865074	K562	blood:	n/a	chr10:49864343-49864353 chr10:49864472-49864482 chr10:49864472-49864486
7	ELF1	chr10:49864224-49865158	MCF-7	breast:	n/a	chr10:49864440-49864449 chr10:49864542-49864551 chr10:49864448-49864461 chr10:49864238-49864250
8	MAX	chr10:49864331-49865158	H1-hESC	embryonic stem cell:	n/a	n/a
9	E2F6	chr10:49864340-49865271	H1-hESC	embryonic stem cell:	n/a	chr10:49864529-49864540
10	CTCF	chr10:49863369-49865660	SK-N-SH	brain:	n/a	chr10:49864472-49864485 chr10:49864472-49864485 chr10:49864473-49864483 chr10:49864476-49864485 chr10:49864470-49864488 chr10:49864471-49864487 chr10:49864404-49864422 chr10:49863462-49863475
11	MAX	chr10:49864240-49865061	NB4	blood:	n/a	n/a
12	RCOR1	chr10:49863355-49865134	IMR90	lung:	n/a	n/a
13	NR2F2	chr10:49863323-49865221	MCF-7	breast:	n/a	chr10:49863372-49863387
14	CTCF	chr10:49865020-49865170	GM12875	blood:	n/a	n/a
15	SMARCB1	chr10:49863375-49865080	Hela-S3	cervix:	n/a	n/a
16	CTCF	chr10:49865000-49865150	GM12873	blood:	n/a	n/a
17	RCOR1	chr10:49865021-49865193	K562	blood:	n/a	n/a
18	ZNF263	chr10:49863598-49865143	HEK293-T-REx	kidney:	n/a	chr10:49864743-49864752 chr10:49864089-49864098
19	MAX	chr10:49863467-49865206	K562	blood:	n/a	chr10:49863987-49863997 chr10:49863989-49863996 chr10:49863988-49863997 chr10:49863984-49863999 chr10:49863988-49863997 chr10:49863684-49863693 chr10:49863987-49863998
20	CTCF	chr10:49863420-49865104	A549	lung:	n/a	chr10:49864472-49864485 chr10:49864472-49864485 chr10:49864473-49864483 chr10:49864476-49864485 chr10:49864470-49864488 chr10:49864471-49864487 chr10:49864404-49864422 chr10:49863462-49863475
21	MAX	chr10:49864200-49865223	H1-hESC	embryonic stem cell:	n/a	n/a
22	ZEB1	chr10:49864101-49865115	GM12878	blood:	n/a	chr10:49864988-49864995
23	CTCF	chr10:49864960-49865110	K562	blood:	n/a	n/a
24	MAX	chr10:49863436-49865147	MCF-7	breast:	n/a	chr10:49863987-49863997 chr10:49863989-49863996 chr10:49863988-49863997 chr10:49863984-49863999 chr10:49863988-49863997 chr10:49863684-49863693 chr10:49863987-49863998
25	CTCF	chr10:49864980-49865130	AG04449	skin:	n/a	n/a
26	SIN3A	chr10:49864917-49865058	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:49731096..49734201-chr10:49864172..49866367,3	K562	blood:
2	chr10:49863839..49866724-chr10:50507173..50508742,2	K562	blood:
3	chr10:49730097..49732596-chr10:49864867..49867280,2	K562	blood:

Variant related genes	Relation type
ARHGAP22	TF binding region
ENSG00000128805	Chromatin interaction
ENSG00000177354	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1550775	1.00[AMR][1000 genomes]
rs28414616	1.00[AMR][1000 genomes]
rs56792058	1.00[AMR][1000 genomes]
rs57417026	1.00[AMR][1000 genomes]
rs58480554	1.00[AMR][1000 genomes]
rs60236086	1.00[AMR][1000 genomes]
rs60709722	1.00[AMR][1000 genomes]
rs7088262	1.00[AMR][1000 genomes]
rs73298212	1.00[AMR][1000 genomes]
rs73298215	1.00[AMR][1000 genomes]
rs73298221	1.00[AMR][1000 genomes]
rs73298225	1.00[AMR][1000 genomes]
rs73298237	1.00[AMR][1000 genomes]
rs73303075	1.00[AMR][1000 genomes]
rs74130585	1.00[AMR][1000 genomes]
rs7893181	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7911933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7916864	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9732742	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49863200-49865200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:49863400-49865400	Enhancers	Fetal Heart	heart
3	chr10:49863800-49865200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr10:49864000-49865200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr10:49864000-49865200	Bivalent Enhancer	Placenta	Placenta
6	chr10:49864000-49865200	Enhancers	Spleen	Spleen
7	chr10:49864400-49865200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:49864400-49865200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr10:49864600-49865200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
10	chr10:49864600-49865200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
11	chr10:49864600-49865200	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
12	chr10:49864600-49865200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:49864600-49865200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chr10:49864600-49865200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:49864600-49865200	Flanking Active TSS	Brain Anterior Caudate	brain
16	chr10:49864600-49865200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
17	chr10:49864600-49865200	Flanking Active TSS	Pancreas	Pancrea
18	chr10:49864600-49865200	Flanking Bivalent TSS/Enh	HepG2	liver
19	chr10:49864600-49865200	Flanking Active TSS	HSMM	muscle
20	chr10:49864600-49865200	Flanking Active TSS	K562	blood
21	chr10:49864600-49865200	Flanking Active TSS	NHLF	lung
22	chr10:49864800-49865200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:49864800-49865200	Bivalent Enhancer	Fetal Intestine Small	intestine
24	chr10:49864800-49865200	Enhancers	Gastric	stomach
25	chr10:49864800-49865200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
26	chr10:49864800-49865400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
27	chr10:49864800-49865400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
28	chr10:49864800-49865400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr10:49864800-49865400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
30	chr10:49865000-49865200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
31	chr10:49865000-49865200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:49865000-49865200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:49865000-49865200	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
34	chr10:49865000-49865200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:49865000-49865200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr10:49865000-49865200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:49865000-49865200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:49865000-49865200	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr10:49865000-49865200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
40	chr10:49865000-49865200	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
41	chr10:49865000-49865200	Active TSS	Primary hematopoietic stem cells	blood
42	chr10:49865000-49865200	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr10:49865000-49865200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
44	chr10:49865000-49865200	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr10:49865000-49865200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
46	chr10:49865000-49865200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
47	chr10:49865000-49865200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:49865000-49865200	Enhancers	Adipose Nuclei	Adipose
49	chr10:49865000-49865200	Enhancers	Brain Angular Gyrus	brain
50	chr10:49865000-49865200	Enhancers	Brain Cingulate Gyrus	brain

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