Variant report

Variant	rs60670300
Chromosome Location	chr10:49868636-49868637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1550775	1.00[EUR][1000 genomes]
rs3923678	1.00[EUR][1000 genomes]
rs58638938	1.00[EUR][1000 genomes]
rs59338484	1.00[EUR][1000 genomes]
rs59719366	1.00[EUR][1000 genomes]
rs59868190	1.00[EUR][1000 genomes]
rs6537569	1.00[EUR][1000 genomes]
rs7077507	1.00[EUR][1000 genomes]
rs7081000	1.00[EUR][1000 genomes]
rs7084382	1.00[EUR][1000 genomes]
rs7084773	1.00[EUR][1000 genomes]
rs7090899	1.00[EUR][1000 genomes]
rs74130520	1.00[EUR][1000 genomes]
rs7909038	1.00[EUR][1000 genomes]
rs7909943	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49865200-49879200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:49866600-49869600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr10:49866800-49869600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:49867000-49869200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr10:49868400-49871200	Enhancers	Primary B cells from cord blood	blood
6	chr10:49868600-49874800	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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