Variant report

Variant	rs59338484
Chromosome Location	chr10:49859425-49859426
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1550775	1.00[EUR][1000 genomes]
rs3923678	1.00[EUR][1000 genomes]
rs58638938	1.00[EUR][1000 genomes]
rs59719366	1.00[EUR][1000 genomes]
rs59868190	1.00[EUR][1000 genomes]
rs60670300	1.00[EUR][1000 genomes]
rs6537569	1.00[EUR][1000 genomes]
rs7077507	1.00[EUR][1000 genomes]
rs7081000	1.00[EUR][1000 genomes]
rs7084382	1.00[EUR][1000 genomes]
rs7084773	1.00[EUR][1000 genomes]
rs7090899	1.00[EUR][1000 genomes]
rs74130520	1.00[EUR][1000 genomes]
rs7909038	1.00[EUR][1000 genomes]
rs7909943	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49843400-49862600	Weak transcription	NHLF	lung
2	chr10:49844000-49863400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:49847800-49859600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr10:49847800-49859600	Weak transcription	HSMM	muscle
5	chr10:49848000-49861600	Weak transcription	Osteobl	bone
6	chr10:49850600-49863400	Weak transcription	Pancreas	Pancrea
7	chr10:49852200-49862400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:49853000-49863400	Weak transcription	Right Atrium	heart
9	chr10:49853800-49863400	Weak transcription	Aorta	Aorta
10	chr10:49854200-49863400	Weak transcription	Brain Angular Gyrus	brain
11	chr10:49855000-49862600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:49856200-49863200	Weak transcription	Spleen	Spleen
13	chr10:49856600-49862400	Weak transcription	HMEC	breast
14	chr10:49857600-49860000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:49857800-49859600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:49857800-49859600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr10:49857800-49861400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:49858800-49859600	Enhancers	Brain Hippocampus Middle	brain
19	chr10:49859200-49863400	Enhancers	Brain Substantia Nigra	brain
20	chr10:49859400-49859600	Enhancers	Lung	lung
21	chr10:49859400-49859600	Enhancers	GM12878-XiMat	blood
22	chr10:49859400-49860000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:49859400-49860400	Active TSS	Brain Anterior Caudate	brain
24	chr10:49859400-49860400	Active TSS	Brain Cingulate Gyrus	brain
25	chr10:49859400-49863000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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